PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000365.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 813aa MW: 92895.1 Da PI: 8.5834

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000365.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.3	7e-54	10	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nrat sgyWkatg+dk+++s +++ CCG000365.1 10 LPPGFRFHPTDEELIVYYLRNQATSRPCPA-SIIPEVDIYKFDPWQLPEKAEFGENEWYFFTPRDRKYPNGVRPNRATVSGYWKATGTDKAIHS-GSK 105 79**************************.89***********99999**************************************.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykgr pkg ktdW+mheyrl CCG000365.1 106 YVGVKKALVFYKGRPPKGAKTDWIMHEYRL 135 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-65	7	162	IPR003441	NAC domain
PROSITE profile	PS51005	61.511	10	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-26	11	135	IPR003441	NAC domain
SuperFamily	SSF48264	5.76E-78	279	597	IPR001128	Cytochrome P450
Gene3D	G3DSA:1.10.630.10	2.5E-82	285	719	IPR001128	Cytochrome P450
Pfam	PF00067	3.9E-53	287	718	IPR001128	Cytochrome P450
PRINTS	PR00463	1.0E-5	547	564	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00385	1.8E-8	558	575	IPR001128	Cytochrome P450
PRINTS	PR00463	1.0E-5	567	593	IPR002401	Cytochrome P450, E-class, group I
SuperFamily	SSF48264	5.76E-78	625	719	IPR001128	Cytochrome P450
PRINTS	PR00463	1.0E-5	637	655	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00385	1.8E-8	638	649	IPR001128	Cytochrome P450

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0080110	Biological Process	sporopollenin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0005506	Molecular Function	iron ion binding
GO:0018685	Molecular Function	alkane 1-monooxygenase activity
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MQGKTIYNQL PPGFRFHPTD EELIVYYLRN QATSRPCPAS IIPEVDIYKF DPWQLPEKAE 60 FGENEWYFFT PRDRKYPNGV RPNRATVSGY WKATGTDKAI HSGSKYVGVK KALVFYKGRP 120 PKGAKTDWIM HEYRLNDPRK QANKQNGSMR LDDWVLCRIY KKRHTIGRLE EKTENTVDAH 180 LGVTPANDVS EQQMMKFPRT CSLSHLLELE YLGSISQLLS GDTNNSNLDL QNLMSNAGTD 240 HVEKIQLGQM SPQHTDRGKF QGNLQGSTLN QPLFVNPTIW NQRQKKGPKT WPTVGAAIEQ 300 FMNYNRMHDW LVKYLSELRT VVVPMPFTTY TYIADPANVE HVLKTNFANY PKGETYHSYM 360 EVLLGDGIFN VDGELWRKQR KTASFEFASR NLRDFSTVVF REYSLKLSSI LSQASFHNQE 420 VEMQGLLMRM TLDSICKVGF GVEIGTLAPS LPDNLFAQAF DTANIIVTLR FIDPLWKVKK 480 FLNVGSEALL DKSIKIVDDF TYSMIRKRKA EIEEGRGTGK NNKMKHDILS RFIELGEDPE 540 SNLTDKSLRD VVLNFVIAGR DTTATTLSWA IYMVMTHNHV AEKLYSELKI FEEDRAKEEN 600 VKLHQINPED PESFSQRAMQ YAGFLTYDSL GRLSYLHAVI TETLRLYPAV PQDPKGIRED 660 DVLPDGTKVK AGGMVTYVPY SMGRMEYNWG PDAASFKPER WLKDGFFQNA SPFKFTAFQF 720 IVVFVLFFNL FNSKELKNLK DHLKLSAQNF KYCMLSVDAL KNIPQSTCPL RTTKCVQGAQ 780 LMLLQMMMQS GSQGGEDKNS APEDQTCNAS MAV

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MQGKTIYNQL PPGFRFHPTD EELIVYYLRN QATSRPCPAS IIPEVDIYKF DPWQLPEKAE  60
FGENEWYFFT PRDRKYPNGV RPNRATVSGY WKATGTDKAI HSGSKYVGVK KALVFYKGRP  120
PKGAKTDWIM HEYRLNDPRK QANKQNGSMR LDDWVLCRIY KKRHTIGRLE EKTENTVDAH  180
LGVTPANDVS EQQMMKFPRT CSLSHLLELE YLGSISQLLS GDTNNSNLDL QNLMSNAGTD  240
HVEKIQLGQM SPQHTDRGKF QGNLQGSTLN QPLFVNPTIW NQRQKKGPKT WPTVGAAIEQ  300
FMNYNRMHDW LVKYLSELRT VVVPMPFTTY TYIADPANVE HVLKTNFANY PKGETYHSYM  360
EVLLGDGIFN VDGELWRKQR KTASFEFASR NLRDFSTVVF REYSLKLSSI LSQASFHNQE  420
VEMQGLLMRM TLDSICKVGF GVEIGTLAPS LPDNLFAQAF DTANIIVTLR FIDPLWKVKK  480
FLNVGSEALL DKSIKIVDDF TYSMIRKRKA EIEEGRGTGK NNKMKHDILS RFIELGEDPE  540
SNLTDKSLRD VVLNFVIAGR DTTATTLSWA IYMVMTHNHV AEKLYSELKI FEEDRAKEEN  600
VKLHQINPED PESFSQRAMQ YAGFLTYDSL GRLSYLHAVI TETLRLYPAV PQDPKGIRED  660
DVLPDGTKVK AGGMVTYVPY SMGRMEYNWG PDAASFKPER WLKDGFFQNA SPFKFTAFQF  720
IVVFVLFFNL FNSKELKNLK DHLKLSAQNF KYCMLSVDAL KNIPQSTCPL RTTKCVQGAQ  780
LMLLQMMMQS GSQGGEDKNS APEDQTCNAS MAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-66	10	165	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-66	10	165	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-66	10	165	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-66	10	165	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-66	10	165	20	171	NAC domain-containing protein 19
3swm_B	1e-66	10	165	20	171	NAC domain-containing protein 19
3swm_C	1e-66	10	165	20	171	NAC domain-containing protein 19
3swm_D	1e-66	10	165	20	171	NAC domain-containing protein 19
3swp_A	1e-66	10	165	20	171	NAC domain-containing protein 19
3swp_B	1e-66	10	165	20	171	NAC domain-containing protein 19
3swp_C	1e-66	10	165	20	171	NAC domain-containing protein 19
3swp_D	1e-66	10	165	20	171	NAC domain-containing protein 19
4dul_A	1e-66	10	165	17	168	NAC domain-containing protein 19
4dul_B	1e-66	10	165	17	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in pollen wall development. Catalyzes the conversion of long-chain fatty acids to the corresponding omega-hydroxylated fatty acids. Omega-hydroxylated fatty acids, together with in-chain hydroxylated fatty acids, are key monomeric aliphatic building blocks for sporopollenin synthesis during exine formation. {ECO:0000269\|PubMed:19700560}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017522.1	0.0	PREDICTED: cytochrome P450 704B1
Swissprot	Q9C788	0.0	C70B1_ARATH; Cytochrome P450 704B1
TrEMBL	A0A3N7FEN8	0.0	A0A3N7FEN8_POPTR; Uncharacterized protein
STRING	POPTR_0008s08840.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-110	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Morant M, et al. CYP703 is an ancient cytochrome P450 in land plants catalyzing in-chain hydroxylation of lauric acid to provide building blocks for sporopollenin synthesis in pollen. Plant Cell, 2007. 19(5): p. 1473-87 [PMID:17496121] Dobritsa AA, et al. CYP704B1 is a long-chain fatty acid omega-hydroxylase essential for sporopollenin synthesis in pollen of Arabidopsis. Plant Physiol., 2009. 151(2): p. 574-89 [PMID:19700560] Choi H, et al. An ABCG/WBC-type ABC transporter is essential for transport of sporopollenin precursors for exine formation in developing pollen. Plant J., 2011. 65(2): p. 181-93 [PMID:21223384] Dobritsa AA, et al. A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Plant Physiol., 2011. 157(2): p. 947-70 [PMID:21849515] Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]