PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000315.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 338aa    MW: 38170 Da    PI: 7.1541
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000315.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++++ +G g+W+++++  g++R++k+c++rw +yl
      CCG000315.1 13 RGLWSPEEDEKLVKYITSHGHGSWSSVPKFAGLKRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding55.11.8e-1766109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
      CCG000315.1  66 RGSFSAEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-26563IPR009057Homeodomain-like
PROSITE profilePS5129419.129860IPR017930Myb domain
SuperFamilySSF466897.86E-3010107IPR009057Homeodomain-like
SMARTSM007175.1E-141262IPR001005SANT/Myb domain
PfamPF002493.0E-161360IPR001005SANT/Myb domain
CDDcd001671.53E-111660No hitNo description
PROSITE profilePS5129426.47161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2564115IPR009057Homeodomain-like
SMARTSM007171.5E-1665113IPR001005SANT/Myb domain
PfamPF002499.1E-1666109IPR001005SANT/Myb domain
CDDcd001672.30E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGHRCCNKQK VKRGLWSPEE DEKLVKYITS HGHGSWSSVP KFAGLKRCGK SCRLRWINYL  60
RPELKRGSFS AEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMAQGL  120
DPKTHNLIPS HQRAANKIAC NISQSNQQPF SIITLDSKMK DYSMEMNPPI LTLPSPYPSN  180
SSTQPPLLQT TTRLPLPTSS YQNPSVIWNE NTQNSQDSSI FPCLSSIENT IISSSSSSSA  240
NPTGFGLLDE NCFWRTNING EPFDAAKIFE VMQSQDQENQ PNKICDTQIM DNTKGVHDNM  300
DASFDTTSYD LEFVDSTILL PGSMCRDLSS MDDLAWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013670.10.0PREDICTED: myb-related protein 330-like
RefseqXP_011013743.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A3N7FG290.0A0A3N7FG29_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-87myb domain protein 67