PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000314.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 339aa    MW: 38706.5 Da    PI: 4.8169
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000314.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.51.8e-5561331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v s +
  CCG000314.1   6 LPPGFRFHPTDEELVAYYLDRKINGHTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRAGYWKATGKDRAVQS-Q 101
                  79****************************.99**************96435566888*************************************9.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++  g+kktLv+y+grap+g +t+Wvmheyr+
  CCG000314.1 102 KRPAGMKKTLVYYRGRAPHGIRTNWVMHEYRM 133
                  99****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-633157IPR003441NAC domain
PROSITE profilePS5100559.4056157IPR003441NAC domain
PfamPF023651.7E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKING HTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DKKYPNGSRT NRATRAGYWK ATGKDRAVQS QKRPAGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRMIDSFCGN ASSILKDSYA LCRVFRKTIQ TPKTKEEKNV GDEVRDAAWV  180
SEEQLLGDNK CRIEISKGRE AEGENFNNDY CKFPSETSSS DVTQGTPIET ATADDLQAPI  240
ASDEANSSAN IYSVGVDFSS NLIQDMQMPV YSSLLYQFPY PSLELEDFPQ MNIAECVKTS  300
KPEISDEYMM YKDCMDGTLE QLCSSEDNSN IVLPHARLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-58115715168NAC domain-containing protein 19
3swm_B3e-58115715168NAC domain-containing protein 19
3swm_C3e-58115715168NAC domain-containing protein 19
3swm_D3e-58115715168NAC domain-containing protein 19
3swp_A3e-58115715168NAC domain-containing protein 19
3swp_B3e-58115715168NAC domain-containing protein 19
3swp_C3e-58115715168NAC domain-containing protein 19
3swp_D3e-58115715168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878611e-100AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013575.10.0PREDICTED: NAC domain-containing protein 74-like
TrEMBLB9HI290.0B9HI29_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-110NAC domain containing protein 20