PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000232.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 367aa MW: 40587.2 Da PI: 6.2915

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000232.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	3e-31	69	122	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l++m++k+L ++hvkSHLQ+YR+ CCG000232.1 69 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQMMNIKDLNIAHVKSHLQMYRS 122 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.489	65	125	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-30	65	124	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.77E-14	67	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-22	69	123	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-8	70	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MKGSDSFEGS KSSYSDEKVG QDEGDEEEVD GINFKSKNEG QSTSNSSIEE NKKKAANGSF 60 RQYIRSKMPR LRWTPDLHLC FVHAVERLGG QDRATPKLVL QMMNIKDLNI AHVKSHLQMY 120 RSKRSEDPGQ GQGLLFEGGD NPICNLRQLA MPQDFNQRSP FNLRYGDASW IGHDHMMCSA 180 YMGGTALNRV KHGLYGSEIG CNNHNSLNYG SSVHIPSLNG KVTGRTHQSL EAVQLFQVSQ 240 QNESTPSSME SDFITKLQER SGILDQVDFL NTSSCADRNW RTIQEMQKGL KRKTLDPDCN 300 LDLNLSLKLA TKDDDELEKF VEGCEVDGTL SLSLSSSSSS SSKLGGSMEG DGSGKHARMA 360 STLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MKGSDSFEGS KSSYSDEKVG QDEGDEEEVD GINFKSKNEG QSTSNSSIEE NKKKAANGSF  60
RQYIRSKMPR LRWTPDLHLC FVHAVERLGG QDRATPKLVL QMMNIKDLNI AHVKSHLQMY  120
RSKRSEDPGQ GQGLLFEGGD NPICNLRQLA MPQDFNQRSP FNLRYGDASW IGHDHMMCSA  180
YMGGTALNRV KHGLYGSEIG CNNHNSLNYG SSVHIPSLNG KVTGRTHQSL EAVQLFQVSQ  240
QNESTPSSME SDFITKLQER SGILDQVDFL NTSSCADRNW RTIQEMQKGL KRKTLDPDCN  300
LDLNLSLKLA TKDDDELEKF VEGCEVDGTL SLSLSSSSSS SSKLGGSMEG DGSGKHARMA  360
STLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011001163.1	0.0	PREDICTED: uncharacterized protein LOC105108499
Refseq	XP_011001232.1	0.0	PREDICTED: uncharacterized protein LOC105108499
TrEMBL	B9HHT8	0.0	B9HHT8_POPTR; Uncharacterized protein
STRING	POPTR_0008s07170.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	2e-46	G2-like family protein