PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG000223.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 425aa MW: 47072.4 Da PI: 9.812

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000223.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.6e-14	235	281	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN + Lr+l+Pk+ +K++Ka+ L A++Y+k+L CCG000223.2 235 KSHSQAEKRRRDRINAQLGILRKLIPKS-----EKMDKAALLGSAIDYVKDL 281 79***********************8.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.739	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-13	233	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-10	235	284	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.5E-16	235	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-12	235	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-13	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.9E-5	327	389	No hit	No description
CDD	cd04873	5.66E-7	328	364	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MLASRIQING RRRGLFVSAV DNDCLVTDTG VKGHGGAESS IYDNQLSAVN SPIEDSAVGN 60 NVGEESGPQT SGASNGSTIL VDIKSRPKRS PLTARERLQA ARFISRYTES KTSKSEMGRK 120 VLDALRESDE GKKRSGLPEA PENMFDDSKR GLPKEGWTFQ FPGGSELFFI VVSFVLISTI 180 MFATTYIVWK DTRTVFNTEQ LKVDKTSHQN ERSIDFLDYP AEMETSENKA ASNSKSHSQA 240 EKRRRDRINA QLGILRKLIP KSEKMDKAAL LGSAIDYVKD LKQKAMEISR TFTIPTEVDE 300 VTVDCDVPQA TNPSSTNKDK DNTFIRASVC CDDRPELFSE LIRVLKGLRL TIVRADIASV 360 GGRVKGILVL CNKCSKEGGV SISTIKQSLN LVLSRIASSS VPSNYRIRSK RQRFFLPSHL 420 SQQYT

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MLASRIQING RRRGLFVSAV DNDCLVTDTG VKGHGGAESS IYDNQLSAVN SPIEDSAVGN  60
NVGEESGPQT SGASNGSTIL VDIKSRPKRS PLTARERLQA ARFISRYTES KTSKSEMGRK  120
VLDALRESDE GKKRSGLPEA PENMFDDSKR GLPKEGWTFQ FPGGSELFFI VVSFVLISTI  180
MFATTYIVWK DTRTVFNTEQ LKVDKTSHQN ERSIDFLDYP AEMETSENKA ASNSKSHSQA  240
EKRRRDRINA QLGILRKLIP KSEKMDKAAL LGSAIDYVKD LKQKAMEISR TFTIPTEVDE  300
VTVDCDVPQA TNPSSTNKDK DNTFIRASVC CDDRPELFSE LIRVLKGLRL TIVRADIASV  360
GGRVKGILVL CNKCSKEGGV SISTIKQSLN LVLSRIASSS VPSNYRIRSK RQRFFLPSHL  420
SQQYT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148238	0.0	EF148238.1 Populus trichocarpa x Populus deltoides clone WS01312_A22 unknown mRNA.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5796	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	3e-41	bHLH family protein