PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG000127.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 307aa MW: 34293.1 Da PI: 7.1532

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG000127.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H CCG000127.1 55 YSCSFCKREFRSAQALGGHMNVH 77 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.6E-6	52	81	No hit	No description
PROSITE profile	PS50157	11.24	55	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.006	55	77	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.4E-6	55	78	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEQAQYWLWM KRKQLLKSQL EAATDSNLKC SLEEKAFAED SSGHLGGCIW PPRSYSCSFC 60 KREFRSAQAL GGHMNVHRRD RARLKQSLTP NPHNDVFRHQ NQIQRSLKSP GSHFPTEVCS 120 LDNYDHDPKL SVSGTINIAS TLSSSRFSAM SPHENLSDHA FVSPFSSYFE QEQHKGYPHL 180 DNNLSGSDHS LTVRLLNDSE SKPEAEKNQG KLDSTCWRHD NFVATDLFMG LSSATNSQSL 240 SSPDSCGNEA ISCKGPKTNV SVLSLLMKPR SNDGYTQSEA IGPNSSSMED IDLELRLGEP 300 PNVKKWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	3e-13	50	77	2	29	superman protein
2l1o_A	3e-13	50	77	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM444546	7e-41	AM444546.2 Vitis vinifera contig VV78X197403.26, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011033484.1	0.0	PREDICTED: zinc finger protein 1-like isoform X1
TrEMBL	B9HML0	0.0	B9HML0_POPTR; Uncharacterized protein
STRING	POPTR_0008s05930.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1776	30	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	1e-25	C2H2 family protein