PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000075.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 220aa    MW: 25149.1 Da    PI: 10.4418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000075.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.8e-061101491155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  CCG000075.1 110 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 149
                  899***************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.42399148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-8110166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-10110160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-5110153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSMALLAFIW TPKFSMMTTS KEMEASLFLI NPSVTINQEF QAMQIKKRTI NELANLLPQR  60
GPSDLVENKT ALSTWKTNKR KKANSPGELW NHQAMESINI QEQKFQVPVR RSQKLSDKIT  120
ALQKLVSPYG KTDTASVLQE ASLYIKLLQE QIQNLIQMLT SSYSRARPIQ QSQEIEGRLV  180
DLRSRGLCFV PISLMQKMTQ QQDHVDPSSY PRKNISATTF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0295231e-78CT029523.1 Poplar cDNA sequences.
GenBankCT0295241e-78CT029524.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024744.11e-130PREDICTED: transcription factor bHLH110-like isoform X2
TrEMBLA0A3N7FDZ41e-125A0A3N7FDZ4_POPTR; Uncharacterized protein
TrEMBLA0A3N7FHR31e-125A0A3N7FHR3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05200.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-21bHLH family protein