PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000068.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 163aa    MW: 17909.4 Da    PI: 9.4051
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000068.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00173355123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F++   L  H  +H
  CCG000068.1 33 FECKTCSRKFPSFQALGGHRASH 55
                 89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-831100No hitNo description
PfamPF139122.2E-123257IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8473360IPR007087Zinc finger, C2H2
SMARTSM003550.323355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
PfamPF139125.5E-1077102IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91278100IPR007087Zinc finger, C2H2
SMARTSM003550.578100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MANCLVFLSK GREAYSFPSF DHAVNNNSPS RVFECKTCSR KFPSFQALGG HRASHKKPKL  60
MGGEGSFESQ SPAKPKTHEC SICGLEFAIG QALGGHMRRH RAALNDQNQP ADPLSLPSSD  120
HQQVVPVVKK SNSRRVLCLD LNLTPNENDM ELFKLGKAAP IYT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023518.11e-119PREDICTED: zinc finger protein ZAT11-like
TrEMBLB9HM541e-112B9HM54_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05110.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-39C2H2 family protein