PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000019.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 489aa    MW: 54338.9 Da    PI: 7.3258
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000019.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.5e-17167216155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  CCG000019.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 216
                  78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16167225IPR016177DNA-binding domain
PfamPF008477.4E-9167216IPR001471AP2/ERF domain
PROSITE profilePS5103217.556168224IPR001471AP2/ERF domain
SMARTSM003803.5E-32168230IPR001471AP2/ERF domain
CDDcd000181.04E-23168226No hitNo description
Gene3DG3DSA:3.30.730.104.0E-17168225IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-6259303IPR016177DNA-binding domain
CDDcd000185.64E-12259304No hitNo description
SMARTSM003801.9E-10260308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MLDLNLGITY SDSSCDDNNK NSMMVVVDVE NHHHQEEEEA SRTRQMEDSA ASNSSNINTT  60
EDENSSNNSN SAFIFDILKK DENFTSTTTI DASKQTNPNC DFTTQQLSPQ RSGLELNLQP  120
GLAVTTATRP QWLKLSQMGS SGEAELTIVQ QKQQQRKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HTAARAYDRA AIKFRGVDAD INFNLSDYEE DMKQMKNLNK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHRCG RWEARMGQFL GKKAYDKAAL NCNGREAVTN  300
FEPSVYKRDT VFDTNYGGSG HNLDLSLGIS QPTNDPKGND NLGDGHCSYG GCEMPIKERQ  360
AAEGTAAAHM GLETLHGLPI ASRNLPTWSG MFPGLSSSYE ERAPEKRFEA VSSPRFSSWP  420
WQINGSNNVV ATMPQLCVAA SSGFSSSTKT VPSATLPFNQ QNHFANNNPR LAAFTTSATN  480
PSLYYSYTS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045163.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X4
SwissprotQ9SK034e-92RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2K1ZBR60.0A0A2K1ZBR6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.14e-85related to AP2.7