PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA12g01320

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 249aa MW: 27322.5 Da PI: 6.5086

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA12g01320	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H CA12g01320 95 FSCNFCQRKFYSSQALGGHQNAH 117 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.94E-6	93	122	No hit	No description
PROSITE profile	PS50157	10.99	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MQTPRFNLEV EALFEDDSDI TSQVASNVCV GETFADPSKN SVIDFTQLNS EPVSLDLSLN 60 QDSIGGFSVS STSESSNELA TTQTSVSGPG FQRVFSCNFC QRKFYSSQAL GGHQNAHKRE 120 RILAKRAMRM GVFSGRYANL ATLPLHRSTI RSLGIKAHAS LHQVSAPAIR PLDFKTSARF 180 EYDNRQSPPL YMENDVADQL VLWPGSFRQV TNPSTSHTNF ALPGCSNVTL TPYVEKDEPI 240 APDLTLRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016552416.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_016552417.1	0.0	PREDICTED: zinc finger protein 4-like
Refseq	XP_016552418.1	0.0	PREDICTED: zinc finger protein 4-like
Swissprot	Q39263	2e-35	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A2G2Y550	0.0	A0A2G2Y550_CAPAN; Zinc finger protein 1
STRING	PGSC0003DMT400034689	1e-161	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	8e-38	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]