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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA12g00840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HB-other | ||||||||
Protein Properties | Length: 186aa MW: 21633.8 Da PI: 3.8516 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.6 | 2.5e-14 | 28 | 72 | 10 | 54 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 + +e Lee+F k + p + +e+L+ +lgL+ +qVk+WF N+R++ CA12g00840 28 QVIEKLEEMFSKMSDPESDVIEQLSGELGLDITQVKIWFDNKRYQ 72 5689***************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-13 | 6 | 70 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.6E-4 | 17 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-10 | 18 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.79E-9 | 23 | 72 | No hit | No description |
Pfam | PF00046 | 8.5E-12 | 28 | 72 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.208 | 30 | 76 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MASQDDENVG PNSDQENEKS ICRYSFEQVI EKLEEMFSKM SDPESDVIEQ LSGELGLDIT 60 QVKIWFDNKR YQIQILIAQR DMEEREILRL ENEILHAEIL QIHSELNNRI CANCDNPEQE 120 QILQDMQNEN ENATITDEIT MMFNMIDHIE EIANDYNDDS NSIDLELRLK RNDDPNGPDL 180 ELRLG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016550008.1 | 1e-127 | PREDICTED: homeobox-leucine zipper protein ROC7-like | ||||
TrEMBL | A0A2G2Y4H7 | 1e-130 | A0A2G2Y4H7_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400030361 | 2e-43 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15229 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 8e-11 | HD-ZIP family protein |