PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g19220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 840aa    MW: 93659 Da    PI: 7.1285
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g19220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-22176277199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       ++ +   ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv +++L +gD v+F   + +++ l
  CA11g19220 176 FCKTLTASDTSTHGGFSVPRRAAEDCfppldykEQRP--AQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVGQKNLVSGDAVLFL--RGEGGDL 270
                 99****************************8743333..348************************************************..4489999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  CA11g19220 271 RLGIRRA 277
                 **99986 PP
2Auxin_resp119.72.3e-39302383182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+s ks+F+v+Y+Pras+++Fvv+++k++ka+++++ +G+Rfkm+f+ +ds+err+sG+v+g+sd+dp+rWpnSkWr+L
  CA11g19220 302 VATALSAKSTFHVFYSPRASHADFVVPYQKYVKAINTRIPIGTRFKMRFDLDDSPERRYSGVVTGISDMDPFRWPNSKWRCL 383
                 6899*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-43168290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-39169287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-20174276No hitNo description
PfamPF023622.1E-20176277IPR003340B3 DNA binding domain
SMARTSM010194.2E-22176278IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633176278IPR003340B3 DNA binding domain
PfamPF065076.9E-33303383IPR010525Auxin response factor
PROSITE profilePS5174520.317710803IPR000270PB1 domain
SuperFamilySSF542774.51E-11713789No hitNo description
PfamPF023097.4E-6713795IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MEIDLNHVVV VMSSEVEKDK NACCNEECDK RGSSGNCSLL YTCTTTTTTT TATTTSSCSS  60
IASSSTSPVV SSIYMELWHA CAGPLTSLPK KGNVVVYFPQ GHMEEAASAT PFSPIKIDFP  120
TFGLQPQIFC RVEDVLLLAN KENDEVYTQL TLLPLPEVRT VEGNGVNPAK SASHMFCKTL  180
TASDTSTHGG FSVPRRAAED CFPPLDYKEQ RPAQELIAKD LHGVEWKFRH IYRGQPRRHL  240
LTTGWSIFVG QKNLVSGDAV LFLRGEGGDL RLGIRRAARP RNGLPESIIK GQYSGTDVLS  300
SVATALSAKS TFHVFYSPRA SHADFVVPYQ KYVKAINTRI PIGTRFKMRF DLDDSPERRY  360
SGVVTGISDM DPFRWPNSKW RCLTVRWDED IMSNHQERVS PWEIDCSVSL PPLSIQSSPR  420
LKKLRTSPQG PSVLDSHFAG SALLDFEESV RSSKVLQGQE NLGLVSPPYG CDKTVRPLDF  480
ELQRVARHNL MPNGIENITV GDFVKTQPPT TYSGFMESNR FPKVLQGQEI CSLRSLTGKG  540
DVNFGAWGKP EFGCNVFGTY QRPRANFYPL ASEGSRNVFL PYNAMYRAGQ DPVGPSYISN  600
FQIENPTLNQ NSIQNVVRRE EGGMPKFGNE QRPPEMSKVS IPENHFKTEN EDSLKPQASC  660
KLFGVSLTKE TSTPSSQSSG KRSCTKVSFH KLHIANWKLF YFRLYCLYLI NGVKVHKQGS  720
LVGRAIDLSR LNGYDDLLIE LERLFNMEDL LRDPNKGWRI LYTDSENDMM VVGDDPWHEF  780
CEVVSKIHIY TQEEVEKMTI QGISDDTHSC LEEAPAATMD VSKSSSIGQP DSSLTTIRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1136340544388Auxin response factor 5
4ldv_A1e-1137640522353Auxin response factor 1
4ldw_A1e-1137640522353Auxin response factor 1
4ldw_B1e-1137640522353Auxin response factor 1
4ldx_A1e-1137640522353Auxin response factor 1
4ldx_B1e-1137640522353Auxin response factor 1
4ldy_A1e-1137640522353Auxin response factor 1
4ldy_B1e-1137640522353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3402590.0DQ340259.1 Lycopersicon esculentum auxin response factor 4 (ARF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547815.10.0PREDICTED: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A2G3BBK10.0A0A2G3BBK1_CAPCH; Auxin response factor
STRINGPGSC0003DMT4000208390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]