PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g18960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92135 Da    PI: 6.1506
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g18960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182583357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  CA11g18960 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                56789****************************************************97 PP
2START154.31e-481643712204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv ++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++ +e+    s g  g+++l +++ 
  CA11g18960 164 IAEETLAEFLSKATGTAVDWVPMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNVEVFTMFSAGngGTIELLYTQI 261
                 7899******************************************************.7777777777****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+++Ry+ +l  g++v++++S++ +   p+    s++vRa++lpSg+li+p+++g+s +++v+h +l++++ +++lr+l++s+ + ++
  CA11g18960 262 YAPTTLAPaRDFWTLRYTTTLDTGSLVVCERSLSGTGAGPNaaaASQFVRAQMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSAPEILRPLYESSKVVAQ 360
                 **************************************9999999****************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++ a+l++ +
  CA11g18960 361 KMTIAALRYAR 371
                 *******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4182084IPR001356Homeobox domain
SuperFamilySSF466891.8E-162186IPR009057Homeodomain-like
SMARTSM003891.0E-152288IPR001356Homeobox domain
CDDcd000864.78E-162585No hitNo description
PfamPF000466.6E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182783IPR009057Homeodomain-like
CDDcd146864.87E-677116No hitNo description
PROSITE profilePS5084826.662154382IPR002913START domain
CDDcd088753.87E-69158374No hitNo description
SMARTSM002344.3E-39163373IPR002913START domain
SuperFamilySSF559616.32E-33163375No hitNo description
Gene3DG3DSA:3.30.530.202.3E-19163368IPR023393START-like domain
PfamPF018525.2E-46164371IPR002913START domain
SuperFamilySSF559611.21E-5411488No hitNo description
SuperFamilySSF559611.21E-5519595No hitNo description
PfamPF086701.2E-48696840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MAMVAQQHRE SSSGSITKHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLQ NASAATTDVS CESVVTTPQH SLRDASNPAG LLSIAEETLA EFLSKATGTA  180
VDWVPMPGMK PGPDSVGIFA ISHSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRNV  240
EVFTMFSAGN GGTIELLYTQ IYAPTTLAPA RDFWTLRYTT TLDTGSLVVC ERSLSGTGAG  300
PNAAAASQFV RAQMLPSGYL IRPCDGGGSI IHIVDHLNLE AWSAPEILRP LYESSKVVAQ  360
KMTIAALRYA RQLAQETSGE VVYGLGRQPA VLRTFSQRLC RGFNDAINGF SDDGWSMLSS  420
DGAEDVIVAV NSRKNLATTS VPLSPPGGIL CAKASMLLQN VPPAVLVRFL REHRSEWADF  480
NVDAYVASSL KSCPYSYPGM RPTRFTGSQI IMPLGHTIEH EEMLEVIRLE GHSIGQEDAF  540
MPRDIHLLQM CSGTDENAVG ACSELVFAPI DEMFPDDAPL LPSGFRIIPL ESKSSDSHDT  600
LNTHRTLDLA SSLEVGAATN PATGDAASCY SARSVLTIAF QFPFEDNLQE NVATMARQYV  660
RSVVSSVQRV AMAISPSGVN PTLGSKLSPA SPEAVTLSHW ICQSYSYHMG TELLRADSSG  720
DESVLKNLWQ HQDAILCCSL KSLPVFIFAN KAGLDMLETT LVALQDISLD KIFDESGRKV  780
LFAEFPKIME QGFACLPGGI CMSAMGRHIS YEQAIAWKVF ASSEENAVHC LAFSFINWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135770.0BT013577.1 Lycopersicon esculentum clone 132322R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547131.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2G2YHP90.0A0A2G2YHP9_CAPAN; Homeobox-leucine zipper protein HOX10
STRINGSolyc11g069470.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]