PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g18740
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 515aa    MW: 58183.5 Da    PI: 4.962
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g18740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09441489348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       W+t E ++lv++v ++G g+W+ I +++     +R++ ++k++w+++l
       CA11g18740 441 YWSTREVLKLVEGVSEYGVGRWSDIKKMFFpssMRRSPADLKDKWRNLL 489
                      6***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.855432493IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-12434494IPR009057Homeodomain-like
SMARTSM007171.0E-9438491IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-14440495IPR009057Homeodomain-like
PfamPF002492.8E-8441489IPR001005SANT/Myb domain
CDDcd116603.13E-17442490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MQNAIDPFEY NWNTSKESAM SFQQEPEQVV GAASVYFALE EEAIGVEQLL AEPEYDDILN  60
TLLDFNTCAF SVPESYFKEF SASDTVLTKS DCGALQRSHN EGDKTKEKFL DGLSNGDDEN  120
HCFISCEDYL LDIELEEDTP TLHDVTRDIS CIESVNLENQ LADSDGRDCG VHVLTLSGAS  180
TSSDHDATIL DNFDCMSTDK LLKVFREMLG HQTPVSDNQW LKPHMIAGLE NQEISDKNFS  240
FPKRSLDSSE NQGVKVPPAS CQNLLTISTA FASIFTFRRK PRVQHMKRRG RIQWNSFKSL  300
SSVAGEIHLD CPDKWDSKES AEENVKCDGM KSGISEQYLK CKPSRRGFGR RYYRRGATVT  360
SQGLGKRNIL PTEDQLIRRE GHLSKDCKAN RAHDDNIHSA EAQDDPSGTL SDQSSDDTSE  420
DDWTIGCETR GTKQDRKCNN YWSTREVLKL VEGVSEYGVG RWSDIKKMFF PSSMRRSPAD  480
LKDKWRNLLR ASCRRLQSRR GVFSFSYQLE TSNL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548737.10.0PREDICTED: uncharacterized protein LOC107848477 isoform X3
TrEMBLA0A2G2YHM70.0A0A2G2YHM7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000207900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-15TRF-like 6