PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g16170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 738aa    MW: 81497.3 Da    PI: 7.0136
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g16170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-094404771954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  CA11g16170 440 FEHflHPYPKDSDKMTLAKQTGLTRSQVSNWFINARVR 477
                 554459******************************88 PP
2BELL114.74.9e-37304375172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 +rqelq+kkakL+s+l+eVd+rY+qy++q+++++ sFe++ag+gs+k+Yt+lAl++iS++FrcLkdai++qi
  CA11g16170 304 QRQELQMKKAKLVSMLDEVDQRYRQYHQQMKMIATSFEQAAGIGSSKSYTQLALHTISKQFRCLKDAISGQI 375
                 69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-49230373IPR006563POX domain
PfamPF075265.9E-44237372IPR006563POX domain
PROSITE profilePS5007112.26418481IPR001356Homeobox domain
SMARTSM003899.5E-10421485IPR001356Homeobox domain
CDDcd000862.63E-12421482No hitNo description
SuperFamilySSF466898.98E-17422488IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28424488IPR009057Homeodomain-like
PfamPF059204.0E-18438477IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MAMYYQGGSE IQADGLQTLY LMNPNYIGYA DTHHHQQQQS ANMFFLNSMP GGNLPHAALS  60
AQPHAQRHLV GVPLQAGFQD PDRPSIEEIS ASHHGLLSRF WSSADQNSSG GGGEGGGGNG  120
SQSRILSSTV VSPNSGTGGD TTTDFASQLG FQRSGLVSPT HAHHEGLSLS LSPQQQQQQQ  180
QQMNFRSFPL DHHEISTTNH QVGVLSSSPS PRTNSNNIDQ TQGSGASSSF SLSKGTILGS  240
KYLKVAQDLL DEVVNVGKNI KLSDGLEDVA KEKHKLDNEL ISLASDYVES SRQKNSVVEL  300
TTAQRQELQM KKAKLVSMLD EVDQRYRQYH QQMKMIATSF EQAAGIGSSK SYTQLALHTI  360
SKQFRCLKDA ISGQIKDTSK TLGEEENIGG KIEGSKLKFV DHQLRQQRAL QQLGMMQTNA  420
WRPQRGLPER AVSVLRAWLF EHFLHPYPKD SDKMTLAKQT GLTRSQVSNW FINARVRLWK  480
PMVEEMYMEE VKKNNQEQNG LDQENIMNKD IEPNNEVVGS KSNAPQEKLT ISSNIHDASP  540
TEISTSTIST SPKGGDGLLL AQTAPGFSFI GTLNMENISD QRNNKKARND MQNSSTSTLL  600
SVDTEINKAG EDTTIKSEKL NGNNNSTHQT RECYPLMTPY TMHDQFGTRF NPNHQQLTTT  660
TSTFHQGNGH VSLTLGLPPN SENQHNFLSN NQNIGLGSHY NRMNNPQASH HPNISYETID  720
FQSGKRYAAQ LLQDYVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16427485563Homeobox protein Meis2
3k2a_B3e-16427485563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4066980.0AF406698.1 Solanum tuberosum BEL1-related homeotic protein 11 (Bel11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547527.10.0PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
TrEMBLA0A2G2YH010.0A0A2G2YH01_CAPAN; BEL1-like homeodomain protein 1
STRINGPGSC0003DMT4000505270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.33e-88BEL1-like homeodomain 1