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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA11g14600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 524aa MW: 58821.9 Da PI: 5.7989 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 76 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C Cgk Fs+ L H+++ H CA11g14600 76 HICCECGKEFSSGKALGGHMSSaH 99 68******************9988 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 154 | 173 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C Cgk F++k +L H+r CA11g14600 154 ICDLCGKDFPSKKSLFGHMR 173 5******************8 PP | |||||||
3 | zf-C2H2 | 14.2 | 0.00013 | 382 | 404 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F ++ L H ++H CA11g14600 382 YTCKICGKIFASHQALGGHRSSH 404 9***************9999998 PP | |||||||
4 | zf-C2H2 | 15.1 | 6.8e-05 | 465 | 487 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k F++ L H+r+H CA11g14600 465 HKCEICDKIFPTGQALGGHQRSH 487 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.64 | 76 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 76 | 99 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.5E-7 | 76 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0023 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.0E-10 | 154 | 175 | No hit | No description |
Pfam | PF13912 | 4.1E-7 | 154 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.0E-10 | 377 | 404 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 382 | 409 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 382 | 404 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.9E-7 | 382 | 405 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 384 | 404 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.16E-6 | 462 | 491 | No hit | No description |
Pfam | PF13912 | 1.4E-9 | 464 | 488 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 465 | 492 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 465 | 487 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 467 | 487 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MEAQDDQENN GSSENGPSSS SSNTFKVKIK IPIRKLVKDE EKIKVDADGD EDLCKEDENK 60 VREEKIDFFA KLKKEHICCE CGKEFSSGKA LGGHMSSAHV QANQRLEELR KWKKNFSQEK 120 SSKLMKRFDD NDDDEDEDDF GDGVFDNHEM MKIICDLCGK DFPSKKSLFG HMRCHPDRDW 180 RGMKPPSGSK KSAKNGGFRA SFNDFDDDGD DANDRFDVLR DEEEEERSID VNVAALSPPP 240 LRIDLKDCVK SWGVTDRRGR SPLTKKRSVS GTCPDEEGVH LAAQQLLSLI NGDNNNNNHN 300 SEVICSSNSV SSAPKEASLS DLKDKPKRKA AVDDTEGAHC GETCSDSPVH KKRRREKVLV 360 KLEPGKDPVP SPVIKKTPDV KYTCKICGKI FASHQALGGH RSSHNKFKIT IENTIDHHQD 420 QEIKARNQED INTQVHAHQD VQLGNQEINN YNIIDQHGSN NNNAHKCEIC DKIFPTGQAL 480 GGHQRSHWTN NQEESSGQNP SKVLDFDLNE LPELPDLDDD YYR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016546163.1 | 0.0 | PREDICTED: uncharacterized protein LOC107846241 | ||||
TrEMBL | A0A2G2XZR3 | 0.0 | A0A2G2XZR3_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400084805 | 1e-147 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2050 | 22 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 7e-17 | C2H2 family protein |