PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g11190
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 450aa    MW: 50173.2 Da    PI: 7.8174
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g11190genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.92.7e-24202255155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++Wt +LH++Fv+av+q+ G +k  Pk+il+lm+++ Lt+e+v+SHLQkYRl
  CA11g11190 202 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMGIPWLTRENVASHLQKYRL 255
                 68*******************.9*******************************8 PP
2Response_reg80.17.2e-27281361109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y +v+++  ++eal ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
    CA11g11190  28 VLVVDDDPTWLKILEKMLKKCSY-QVTTCGLAREALYLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 122
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
    CA11g11190 123 DYLLKPIRMKELRN 136
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.9E-1431447IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.1E-4525162No hitNo description
SuperFamilySSF521724.98E-3625150IPR011006CheY-like superfamily
SMARTSM004488.4E-3226138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.79927142IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-2428137IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.19E-3129142No hitNo description
SuperFamilySSF466892.33E-17200259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27200260IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-21202255IPR006447Myb domain, plants
PfamPF002492.7E-8204254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MMENTSKNSG GFSTPRSDNN TFPAGLRVLV VDDDPTWLKI LEKMLKKCSY QVTTCGLARE  60
ALYLLRERKD GFDIVISDVN MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG  120
ACDYLLKPIR MKELRNIWQH VLRKKMQEAR DVGNHELDQY DEVWMLNGAE ILSGKKRKDF  180
DNKHDEKDMS EPRGVDSSSM KKARVVWTVD LHQKFVKAVN QIGFDKVGPK KILDLMGIPW  240
LTRENVASHL QKYRLYLTRL QKENEVKASF CGVKHPDVSS QETSSSLSLQ NPVDVCTDVT  300
NDKYGGVSGG KAIVQNGKSS ICESKVKVVV SVPAAEPSSV VEDNFGSPAA VSKIGLNDSF  360
GLVNTNVKNS KVPTTYCSTG EAPQPQYKQD FNQSANGSSH QPLPVVSHQI PVDHTQETCF  420
LSHVPSREER DRHPDIKINL LSSRAKVKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-17198260163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-158HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755171e-158HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016547324.10.0PREDICTED: two-component response regulator ARR11-like
SwissprotQ5N6V81e-127ORR26_ORYSJ; Two-component response regulator ORR26
SwissprotQ9FXD61e-127ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A2G2YFJ10.0A0A2G2YFJ1_CAPAN; Two-component response regulator
STRINGSolyc05g014260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]
  2. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  3. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]