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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
CA11g10750 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
| Family |
SRS |
| Protein Properties |
Length: 444aa MW: 46136.3 Da PI: 8.4162 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CA11g10750 | genome | PEP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 219.4 | 7.5e-68 | 233 | 397 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaeskk 98
+++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++ a+++ + a+ +++++k++r +s++++++s+t++s++++++
CA11g10750 233 SSTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLMAGATTNVNVAAGsssqSTSSAKKPRLVNSQTTTTASHTSTSNNTPPR 331
5679*********************************************988877665544333344577788899999999999************** PP
DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++tss lP +v+++avf+cvrv+svd+ge+e+aYq+av igGhvfkG+LydqGl+e
CA11g10750 332 SFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDEGEDEYAYQAAVRIGGHVFKGFLYDQGLDE 397
****999********************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 444 aa
Download sequence Send
to blast |
IATFFLPFSG RNLLKSAAVA TARRLLQASD SGAFADWVAN SSTSSAAAIG DLSLGFNAGT 60
TISGGGGNGT TGGGGGGHSG MWSASSSRQM QINYGLQPEM GMFVVHPASF HHHHHNQEST 120
INFDPHHHHQ SINVTSNLSN TSATNTSLGV GVGVGVIPLL TATPLTNMVS FDDQDLVSRN 180
RGGNDGSGFQ FFSNQQPQNS TNYTKNSTSN ILGGGSGNIG GNNNIGGSVS STSSTTCQDC 240
GNQAKKDCTH RRCRTCCKSR GFDCTTHVKS TWVPAARRRE RQLMAGATTN VNVAAGSSSQ 300
STSSAKKPRL VNSQTTTTAS HTSTSNNTPP RSFDTSSSHQ DASFKASLPG QVRAPAVFKC 360
VRVTSVDEGE DEYAYQAAVR IGGHVFKGFL YDQGLDEGKN NNNFPNLSDL HLGGGNGNEP 420
SDLYATSTGG GLLGGSNYGN PIN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975450 | 1e-95 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 4e-68 | Lateral root primordium (LRP) protein-related |
