PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g07790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 514aa    MW: 57541.7 Da    PI: 6.0811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g07790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.9e-14303346755
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++Lq
  CA11g07790 303 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 346
                 57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-207157IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.605296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.10E-14298348No hitNo description
SuperFamilySSF474595.63E-17298364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-14302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17303364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11304346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MERALECLRQ LVDSKNWEYC VVWKLGDDPS RFIEWKGCCC SGANGFDVNV KKENGGKQKV  60
TALCRDIQVR HPIRTKACEA LAQFPLSISL YSGIQGEVVT SNEPKWINHA EISNSSLLHD  120
LMGTLVLIPV SGGLVELYNS ELIYKDQKTI NFIINCFKLG SEEANSSIAR KEDQVLVFFP  180
YEKLNFTAPL MQYATSFPST APHIFQVSES SANPSIQGSS TGSTPSNELT LCHSPSDHLS  240
QNIPLSQSTE GYFEHTELQC SENLSRMEAT AFPWKQENYI VAGDMFAMGK KRQKGPYQSK  300
NLVTERKRRN RIKDGLFALR ALVPNISKMD KVAILGDAID YINELQEKMK LYETELNEIE  360
AEVTNNEAAE MVLSDMTEIS KVTGPTNEKT QSSNTTNRTR MESPLYFALQ VEVNQIDARK  420
FLLNFSGSHK TGRFTQLMEA MSYLGLEIVN VSFTTSGGEI LSIFIAEVNF ILKKTVEINN  480
QILLPYIFCF MLVSVNLSKC CTHIGSSKNC ITF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288294GKKRQKG
2289308KKRQKGPYQSKNLVTERKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548637.10.0PREDICTED: transcription factor bHLH90-like isoform X1
TrEMBLA0A2G2YEN20.0A0A2G2YEN2_CAPAN; Uncharacterized protein
STRINGSolyc05g005300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.16e-45bHLH family protein