 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
CA11g05650 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 152aa MW: 17800 Da PI: 6.8044 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CA11g05650 | genome | PEP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.1 | 3.5e-19 | 41 | 94 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q++ Le+ Fe +++++ e++ +LA++lgL+ rq+ +WFqNrRa++k
CA11g05650 41 KKRRLLPNQVQFLEKSFEVDNKLDPERKVQLANELGLQPRQIAIWFQNRRARYK 94
45578899*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 126.4 | 1.2e-40 | 40 | 131 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl +qv++LE+sFe ++kL+perKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke+e+Lr+e++
CA11g05650 40 EKKRRLLPNQVQFLEKSFEVDNKLDPERKVQLANELGLQPRQIAIWFQNRRARYKTKVLEKDYDVLKASFDKLKADYDNLFKENEDLRNEVS 131
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 152 aa
Download sequence Send
to blast |
MVNFEDGGRG EIAKERPFFP AIDKEETGND DYDSCFHHPE KKRRLLPNQV QFLEKSFEVD 60
NKLDPERKVQ LANELGLQPR QIAIWFQNRR ARYKTKVLEK DYDVLKASFD KLKADYDNLF 120
KENEDLRNEV SSNSLQNQHS RLALQLPKGF I*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975444 | 1e-142 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
