PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CA11g04260

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

G2-like

Protein Properties

Length: 363aa MW: 40759.8 Da PI: 6.9264

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA11g04260	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.3e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl CA11g04260 21 KPRLKWTPDLHQRFVDAVSQLGGPDKATPKSLMRVMNIHGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.224	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-31	19	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-16	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-8	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-21	157	203	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MALQNTQQSK DMNLVLSSDA KPRLKWTPDL HQRFVDAVSQ LGGPDKATPK SLMRVMNIHG 60 LTLYHLKSHL QKYRLGKSQV TDQSFDEKKQ EGKLELCTIA HDDDTKENEI SKSLNQRTYF 120 DAESDQLSLG VSCDGSQNQM NDIYNISLAK AFVRSLQIAR ALQMQMDVQR KLHQQIEVQR 180 HLQLRIEAQG KYLQSVLRKA QETLAGYGTS SVGVELAKAE LSQLVSMVNM SCCPSTSLSA 240 ITEIDGSISK DTQTKNLKGG ILSSLESSLT SSESSARKED QNDTRNNKNT NCIGLSLNQE 300 TKERKRSRNN ICDHDMCVEQ PSGKRFLETI DLNSKCPNEY DENGPKVIDL NYKEVEQFNE 360 YS*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MALQNTQQSK DMNLVLSSDA KPRLKWTPDL HQRFVDAVSQ LGGPDKATPK SLMRVMNIHG  60
LTLYHLKSHL QKYRLGKSQV TDQSFDEKKQ EGKLELCTIA HDDDTKENEI SKSLNQRTYF  120
DAESDQLSLG VSCDGSQNQM NDIYNISLAK AFVRSLQIAR ALQMQMDVQR KLHQQIEVQR  180
HLQLRIEAQG KYLQSVLRKA QETLAGYGTS SVGVELAKAE LSQLVSMVNM SCCPSTSLSA  240
ITEIDGSISK DTQTKNLKGG ILSSLESSLT SSESSARKED QNDTRNNKNT NCIGLSLNQE  300
TKERKRSRNN ICDHDMCVEQ PSGKRFLETI DLNSKCPNEY DENGPKVIDL NYKEVEQFNE  360
YS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571687.1	0.0	PREDICTED: uncharacterized protein LOC107869749 isoform X1
TrEMBL	A0A2G2YDE5	0.0	A0A2G2YDE5_CAPAN; Uncharacterized protein
STRING	Solyc05g007890.2.1	1e-176	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	8e-78	G2-like family protein