PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g03750
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 506aa    MW: 56047 Da    PI: 7.4939
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g03750genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.47.2e-34225281259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  CA11g03750 225 DDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 281
                 8****************************************.***************8 PP
2WRKY107.19.1e-34391449159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  CA11g03750 391 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 449
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-30218283IPR003657WRKY domain
SuperFamilySSF1182901.96E-26222283IPR003657WRKY domain
SMARTSM007741.8E-37224282IPR003657WRKY domain
PROSITE profilePS5081123.984225283IPR003657WRKY domain
PfamPF031061.1E-25225281IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37377451IPR003657WRKY domain
SuperFamilySSF1182905.75E-30383451IPR003657WRKY domain
PROSITE profilePS5081139.192386451IPR003657WRKY domain
SMARTSM007742.9E-40391450IPR003657WRKY domain
PfamPF031062.4E-26392449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MAENEGLSSS SATSRGQLVR PTITLPPRNS MDSLFSGGIS PGPMTLVSSF FSDNDPDSEC  60
RSFSQLLAGA MTSPAGISAC DHVKDNLGCY SFYGLRFANP FNVCHLNRYK LRLSCTYHFS  120
DIYNSDLCIF ICQGPFGMSH QQVLAQLTAQ ASQPQSQMHI QPDYSSSSAA TALSMSPFQS  180
LTSNTAANQQ IPPALDPNTI KESSDVSLSD QRSEPASFVV DKPADDGYNW RKYGQKQVKG  240
SEYPRSYYKC TQPNCPVKKK VERSLDGQVT EIIYKGQHNH QPPQASKRSK ESGNPNGNYN  300
LQGTYEPKEG EPSYSLRMKD QESSLANDQI SGSSDSEEVG NAETRVDGRD IDERESKRRA  360
VEVQTSEAVC SHRTVAEPRI IVQTTSEVDL LDDGYRWRKY GQKVVKGNPY PRSYYKCTSQ  420
GCNVRKHVER AASDPKAVIT TYEGKHNHDV PAARNSSHNT ANNSTSQLRP HNPVFDKPTA  480
MRRSDFPSNE QQPIALLRFK EEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-42225452878Probable WRKY transcription factor 4
2lex_A6e-42225452878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1803480.0DQ180348.2 Capsicum annuum transcription factor WRKY2 (RKNIF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311582.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-142WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1U8ENV80.0A0A1U8ENV8_CAPAN; probable WRKY transcription factor 4
STRINGSolyc05g012770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-146WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]