PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g01590
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 302aa    MW: 33066.9 Da    PI: 6.5069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g01590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14105151354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  CA11g01590 105 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 151
                 79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11105151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15106172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-15106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-5115154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSQILPWTLP PVQPFMNPVH HHHDPFLLPP PPXXRPMGGG GGGATSSSSS DHHGLRFISD  60
TLVGQVVHHH QPGSVSVAAP FGLQAELQKM TAQEIMDAKA LAASKSHSEA ERRRRERINN  120
HLAKLRSLLP NTTKTDKASL LAEVIQHVKE LKRQTSLIAE TSPVPTEIDE LTVDNATSDE  180
DGKFLIKASL CCEDRSDLLP DLIKTLKALR LKTLKAEITT LGGRVRNVLF ITPDDYYCNN  240
QELDTCSNGG DDDDDCQMQQ PQYCISSIQE ALKAVMEKSS GDDSTSASVK RQRTNNINIL  300
T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-127HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548540.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y14e-95BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2G2YCN00.0A0A2G2YCN0_CAPAN; Transcription factor bHLH30
STRINGPGSC0003DMT4000021551e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]