PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g01070
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CO-like
Protein Properties Length: 471aa    MW: 53516.8 Da    PI: 5.0258
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g01070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box292.3e-091757438
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                r C+++ +k+++++C  ++ +lC++C  + H+       H+
  CA11g01070 17 RACDNCIKKRARWYCPADDAFLCQNCDASVHSAnplahrHE 57
                78****************************96688994444 PP
2CCT67.43.8e-23411454144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  CA11g01070 411 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 454
                 9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5231461IPR000315B-box-type zinc finger
CDDcd000213.33E-101761No hitNo description
PfamPF006433.2E-71759IPR000315B-box-type zinc finger
PfamPF062038.1E-18411453IPR010402CCT domain
PROSITE profilePS5101716.083411453IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MVSERKLASA MGGKTLRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLAHRHERVR  60
LKTSSLKEPL SSLDDYLPDL ESPVSVSSVS VSVSVPSWHH GFTRKARTPR HGRKASKSAG  120
DGDVILMKNP IHIVPEMLSD ENSHDEIEEE QLLYRVPILD PFVAELCSSA TNNQEMVENS  180
TTAAAAEMDS EFKVESKETA LQDDICNVDL NRFHGVLPSE MELAEFAADV ENLLGKGLDD  240
HESFDMEGLG LLEVCNDNKE ENSMECSMVS HEKVKIEDEG EVEFVTKTTS ATTHYDHQFD  300
HSTHHDIDIN GDTFEFKFDY DSPMNIRRED EVVMKNIRED NNVAIDDENQ INKKILLNLD  360
YEGVLTAWAD QRSPWTNGER PELDTNDSWP DCMGNYMGIM NENAIIVDRG REARVSRYRE  420
KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRANFATTT TTTPNYPMVK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421437RRTRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-150HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548727.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2G2YC720.0A0A2G2YC72_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000377550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-92B-box type zinc finger protein with CCT domain