PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g00230
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 350aa    MW: 38960.6 Da    PI: 7.0291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g00230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.26.4e-14265290126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++t  C+yGd+C+FaHg
  CA11g00230 265 FKTELCNKWQETAACPYGDNCQFAHG 290
                 79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-18259297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-11261296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197264292IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-7264291IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-11265290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-11298330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-8298332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291302330IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4302329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MHREISTAAG HGGAFSYDNE LSQPTAFDLS SLYSSMLLHP TGLLLDDSQN STETTVTPVL  60
TPRFRQSQSS NQLLIDQHYQ QDLMDRHNRV LSQLLETEKK TLALRQENIN LKMANFNLNN  120
RLSSLLSDYG PSSGLGLDNG LLRDYGPSSG LGLNNGLRRM HVGLEEEMSS DGHSWEDVVA  180
DRHLSPTSVM DSGRVEGVDR ILLPKSISVR SSGYLKTIHA AGGSSKQQNR AKASSVNTAQ  240
RVYVKGGNEK EEQPLELDVY NQGMFKTELC NKWQETAACP YGDNCQFAHG IEELRPVLRH  300
PRYKTEVCRM VLNGDPCPYG HRCHFRHTLT DQEKLMRSLN TTSSLSLKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21265327466Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-124HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546634.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
RefseqXP_016546635.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
TrEMBLA0A1U8ETD70.0A0A1U8ETD7_CAPAN; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G2YC360.0A0A2G2YC36_CAPAN; zinc finger CCCH domain-containing protein 15-like
STRINGPGSC0003DMT4000785220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-61C3H family protein