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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g20440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HSF | ||||||||
Protein Properties | Length: 245aa MW: 28281.9 Da PI: 8.297 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.5 | 2.1e-33 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+k+ +++ weF+++ F++g+k+ll++i+ CA10g20440 25 FLLKTYMLVEDPATDDIISWNSDGSAFIVRQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKIATSR---------WEFSNDLFRRGDKDLLCDIR 112 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 rkk CA10g20440 113 RKKA 116 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-35 | 18 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-50 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-32 | 21 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.4E-30 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-18 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-18 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-18 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGNLEGDQSE RTLLEYVRKS STPPFLLKTY MLVEDPATDD IISWNSDGSA FIVRQPAEFA 60 RDLLPTLFKH CNFSSFVRQL NTYGFRKIAT SRWEFSNDLF RRGDKDLLCD IRRKKAWTNK 120 QQPNKNNKKE TDNEDQRSSS STSSSSSLEY NSLIDENKRL KKENGALNSE LSSINKKCKE 180 LIDIVSMLAE NSEKEEEEKE GQIKGNKRPK LFGVRLEVEE EMEKKRKRVE FNEIASVFLS 240 QLCK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-21 | 20 | 114 | 15 | 120 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00305 | DAP | Transfer from AT2G41690 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244599 | 3e-79 | AC244599.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-35a7 map 10, complete sequence. | |||
GenBank | HG975522 | 3e-79 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016543829.1 | 1e-178 | PREDICTED: heat stress transcription factor B-3-like | ||||
Refseq | XP_016543830.1 | 1e-178 | PREDICTED: heat stress transcription factor B-3-like | ||||
Swissprot | O22230 | 9e-64 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A1U8EIW5 | 1e-177 | A0A1U8EIW5_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YP50 | 1e-177 | A0A2G2YP50_CAPAN; heat stress transcription factor B-3-like | ||||
STRING | PGSC0003DMT400021089 | 1e-129 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 2e-60 | heat shock transcription factor B3 |