PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g19940
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 264aa    MW: 29494.5 Da    PI: 6.3974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g19940genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.9e-1477129155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++ +hn+ Er RR++iN  ++ Lr+llP +  ++ kKls  +++ k  +YI +Lq
  CA10g19940  77 KKLNHNASERDRRKKINGLYSSLRSLLPAS--EHTKKLSIPATVSKILKYIPELQ 129
                 6789*************************7..37777***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.80276128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1576144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.95E-1277133No hitNo description
PfamPF000101.4E-1177129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1377143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-1082134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLAISPSSPL FSVNNNCEWL LEDLISYELN TINGENSNSD IAINSSSQKS LQHCDSIKFD  60
HQIINGGDHN QPDQTVKKLN HNASERDRRK KINGLYSSLR SLLPASEHTK KLSIPATVSK  120
ILKYIPELQN EVERLIQKKE EFTSSTISNR EKSDDFNKQK RIIRGGIENS SLVISASEVG  180
NKEIVIQIST LQNNKGSIGE AISILEDEGL VLLNATSFET FEDRVFHTLH FQVLLNIVLI  240
CFCCSDPPKM LSDVCLIIQK LAR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-115HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544540.11e-167PREDICTED: transcription factor ORG2-like
TrEMBLA0A1U8EMF21e-166A0A1U8EMF2_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YNX31e-166A0A2G2YNX3_CAPAN; transcription factor ORG2-like
STRINGSolyc10g079650.1.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-43bHLH family protein