PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g15020

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 808aa MW: 92459.3 Da PI: 8.1997

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g15020	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.4	1.1e-18	54	129	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA++ GF++r+ + ++s+ +g++++r++vCskeg++++ +rtgC a ++v++ + +gkw+++++++eHnH++ CA10g15020 54 WYSNYATKKGFRIRIGQLYRSRIDGSVMSRRYVCSKEGFQTS--------------SRTGCPAFIRVQRVDdSGKWVLANVNKEHNHAME 129 7************************************876..............589******999*************985 PP
2	FAR1	63.1	8.1e-20	242	317	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++ +g+w v+++++eHnHel CA10g15020 242 EFYHSYAVNTGFRVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQATGRWLVDRCHNEHNHELG 317 6************************************9998..............4899*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.1E-15	54	128	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.6E-15	242	317	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-26	416	507	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.435	693	729	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.3E-8	699	726	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-8	704	731	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
MSNTMTVKAK PTTTEQLAIS TIVKNHDQNH NHHDEEGEPN VGLEFDTAED AQEWYSNYAT 60 KKGFRIRIGQ LYRSRIDGSV MSRRYVCSKE GFQTSSRTGC PAFIRVQRVD DSGKWVLANV 120 NKEHNHAMEN ADETCVPKIV QRKVVVDRTV KLKSKSSSGL RSFDDDGPSS RSGVVDFKRV 180 VNQTTKLKSS TGLRSLDEDD GLSGRCGVID FKRVRRERVN GESRGGEPYK GLEFVTAGEA 240 YEFYHSYAVN TGFRVRIGQL FRSKNDGSIT SRRFVCSKEG HQHPSRVGCG AFMRIQRQAT 300 GRWLVDRCHN EHNHELGPPG DVSERVSLKG FKEEGSCELE NMDLVESNGG LSLVTRSRES 360 RIGSDWYNEL FDYFQSRQAE DMGFFYAAEV HKGRAMSVLW ADSRSRFACT QFGDAVVFDT 420 TYRRGSCLVP LALFVGVNHH RQPVLLGCAL IAEESEESFT WVFQAWLRAM SGRCPISIVA 480 DQDRAIQHSV AQVFPGTHHR FSPWQVVAKE QEAIGALRSM NPEFKYEYET CISQSQTPNE 540 FEAAWNVLIN KYNLRENTWL KEMYNMRKSW VPLYIRGTFF AGIPIDGSFK SYLGNILTSQ 600 APLCEFIIRY EKSLEQRREE ERKEDFNSFN LQPVLHTKDP IEDQGRRLYT ITMFKVFQKE 660 LLECYSYVAI KINVEGAISR YLVQKCGNGD ERNTVAFNAS NLNISCSCKM FEFEGVLCRH 720 ALKVFQIMNI RELPSRYILH RWTKDAKYGI LRDVDSGGTS QDYKALMLWS LREEAKNYIE 780 AGTTSLERYK LAFEIMQEGR RNLCWQN*

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

MSNTMTVKAK PTTTEQLAIS TIVKNHDQNH NHHDEEGEPN VGLEFDTAED AQEWYSNYAT  60
KKGFRIRIGQ LYRSRIDGSV MSRRYVCSKE GFQTSSRTGC PAFIRVQRVD DSGKWVLANV  120
NKEHNHAMEN ADETCVPKIV QRKVVVDRTV KLKSKSSSGL RSFDDDGPSS RSGVVDFKRV  180
VNQTTKLKSS TGLRSLDEDD GLSGRCGVID FKRVRRERVN GESRGGEPYK GLEFVTAGEA  240
YEFYHSYAVN TGFRVRIGQL FRSKNDGSIT SRRFVCSKEG HQHPSRVGCG AFMRIQRQAT  300
GRWLVDRCHN EHNHELGPPG DVSERVSLKG FKEEGSCELE NMDLVESNGG LSLVTRSRES  360
RIGSDWYNEL FDYFQSRQAE DMGFFYAAEV HKGRAMSVLW ADSRSRFACT QFGDAVVFDT  420
TYRRGSCLVP LALFVGVNHH RQPVLLGCAL IAEESEESFT WVFQAWLRAM SGRCPISIVA  480
DQDRAIQHSV AQVFPGTHHR FSPWQVVAKE QEAIGALRSM NPEFKYEYET CISQSQTPNE  540
FEAAWNVLIN KYNLRENTWL KEMYNMRKSW VPLYIRGTFF AGIPIDGSFK SYLGNILTSQ  600
APLCEFIIRY EKSLEQRREE ERKEDFNSFN LQPVLHTKDP IEDQGRRLYT ITMFKVFQKE  660
LLECYSYVAI KINVEGAISR YLVQKCGNGD ERNTVAFNAS NLNISCSCKM FEFEGVLCRH  720
ALKVFQIMNI RELPSRYILH RWTKDAKYGI LRDVDSGGTS QDYKALMLWS LREEAKNYIE  780
AGTTSLERYK LAFEIMQEGR RNLCWQN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	0.0	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543349.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A1U8EHH9	0.0	A0A1U8EHH9_CAPAN; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2G2YMB4	0.0	A0A2G2YMB4_CAPAN; protein FAR1-RELATED SEQUENCE 7-like
STRING	Solyc10g084220.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]