PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA10g11370

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 750aa MW: 84500.2 Da PI: 6.433

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA10g11370	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.7e-17	65	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+++YA +vGFs+ + + ++ k ng i++ +f Cs+e +r+++ ++ C+a+l+++k++++ w+vtk++++HnH+++ CA10g11370 65 NFFEAYAMRVGFSIHVGQFSRAKPNGPIITWDFSCSREVFRSRNIES--------------CNAMLRIEKKSSDSWVVTKFVEDHNHSMV 140 69**************************************99877..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-14	65	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.6E-29	280	372	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.127	557	593	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.8E-11	559	591	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	568	595	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MNSEVTDIVG QKRQKSGERV SESNQNPKQG LPDNLAERDS TIEVDDGEEK PYVGMEFQTE 60 EAAKNFFEAY AMRVGFSIHV GQFSRAKPNG PIITWDFSCS REVFRSRNIE SCNAMLRIEK 120 KSSDSWVVTK FVEDHNHSMV NPRKVNYLRP RKHVAGASKT VGEVPGAPTV VMVPPVVIPV 180 DGNHVFVSSN EGVKDASAVE SNRVTKNFSP AIPLMFIQPC SRKRTLGRDA HNLLDYFKKM 240 QAENPGFYYA IQLDDENRMT NAFWADARSR ISYRHFGDAV IFDTMYRPNL FQVPFAPFTG 300 VNHHGQMVLF GCGLLLDESE SSFTWLFRTW LSAMNNRPPV SITTDQDRAI KTAVNVVLPS 360 TRHCICKWHI LREGQERLAH VYMAHPSFYG ELYSCINYSE TIEDFESSWV SVLDKYKLGK 420 NEWLQAVYNA RDQWAPVYFR DSFFAALPSN QGVTSFFDGY VNQQTTLPMF FKQYERALES 480 SLEREIASDF DTNCTTPMLR TPSPMEQQAA NLFTKIVFAK FQEELVETFA HTANKIDGDE 540 TRSKFRVAKY EQDDKAYIVM LNFAEMKASC SCQMFEYSGI LCRHILTVFT VTNVLKVPSH 600 YILKRWTRNA KVGQGSDEED IVKQGINSLT SRFNHLCVEA LRYAEEGAVS VESYDAAVSA 660 LRDGLRKISI VAKNVARPLT SQGSGSTQDE SIKSTPATSD TAPSLWTWQD AMPHHFNLND 720 GGLTAGDLNQ PTMTPVAINH DGGLADNVV*

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MNSEVTDIVG QKRQKSGERV SESNQNPKQG LPDNLAERDS TIEVDDGEEK PYVGMEFQTE  60
EAAKNFFEAY AMRVGFSIHV GQFSRAKPNG PIITWDFSCS REVFRSRNIE SCNAMLRIEK  120
KSSDSWVVTK FVEDHNHSMV NPRKVNYLRP RKHVAGASKT VGEVPGAPTV VMVPPVVIPV  180
DGNHVFVSSN EGVKDASAVE SNRVTKNFSP AIPLMFIQPC SRKRTLGRDA HNLLDYFKKM  240
QAENPGFYYA IQLDDENRMT NAFWADARSR ISYRHFGDAV IFDTMYRPNL FQVPFAPFTG  300
VNHHGQMVLF GCGLLLDESE SSFTWLFRTW LSAMNNRPPV SITTDQDRAI KTAVNVVLPS  360
TRHCICKWHI LREGQERLAH VYMAHPSFYG ELYSCINYSE TIEDFESSWV SVLDKYKLGK  420
NEWLQAVYNA RDQWAPVYFR DSFFAALPSN QGVTSFFDGY VNQQTTLPMF FKQYERALES  480
SLEREIASDF DTNCTTPMLR TPSPMEQQAA NLFTKIVFAK FQEELVETFA HTANKIDGDE  540
TRSKFRVAKY EQDDKAYIVM LNFAEMKASC SCQMFEYSGI LCRHILTVFT VTNVLKVPSH  600
YILKRWTRNA KVGQGSDEED IVKQGINSLT SRFNHLCVEA LRYAEEGAVS VESYDAAVSA  660
LRDGLRKISI VAKNVARPLT SQGSGSTQDE SIKSTPATSD TAPSLWTWQD AMPHHFNLND  720
GGLTAGDLNQ PTMTPVAINH DGGLADNVV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538323.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_016538324.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2G2YYN7	0.0	A0A2G2YYN7_CAPAN; Protein FAR1-RELATED SEQUENCE 3
STRING	Solyc01g096850.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]