PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g11320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 245aa MW: 28357.3 Da PI: 8.7942 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.6 | 1.4e-25 | 37 | 125 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++YneYA ++GFsvrk++ +ksk +g it+r+f+C+ke +r ++k++ +++r+et tgC a+++v+++ ++k+ v+ +e++HnH+l+ CA10g11320 37 NYYNEYAANIGFSVRKEYVNKSKAHGYITSRRFTCYKESYRGKDKRD-GMVKKPRKETGTGCLAHMVVSRQPNEKFLVILFEEKHNHPLV 125 69******************************************999.999*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.9E-23 | 37 | 125 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVDSMKTVSL NGHNDTSHSC EPIKLGMKFD SDEDGFNYYN EYAANIGFSV RKEYVNKSKA 60 HGYITSRRFT CYKESYRGKD KRDGMVKKPR KETGTGCLAH MVVSRQPNEK FLVILFEEKH 120 NHPLVYPSLA HMLPSQRTVK LSQVNEIDLL DDLGICPKSS FNYVARQAEE KSILGFTQRD 180 HKNYLRDKRK ESLRFEVAHS LVNYFEEIVI KDPSFQFSLQ LDSDGLITNV FWADVKMIRN 240 FQIY* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016484692.1 | 1e-97 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like | ||||
TrEMBL | A0A2G2YLD2 | 1e-149 | A0A2G2YLD2_CAPAN; Uncharacterized protein | ||||
STRING | XP_009619707.1 | 8e-94 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-37 | FAR1-related sequence 5 |