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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA10g04800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 22189.7 Da PI: 6.1754 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H CA10g04800 36 YECNFCKRGFTNAQALGGHMNIH 58 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.41E-7 | 34 | 63 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-5 | 34 | 62 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.261 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MASEKNNNYS DSSSEDTMDR ESEKFNDDNT GMGRSYECNF CKRGFTNAQA LGGHMNIHRK 60 DKLKAKQNNS HHHQESTSRK LSQQEANYYA FDNSRFSAPN SSTHDEQHHY SRAQMNSYQF 120 FFQLPQNPSY QHVYTNHHDD SRSRHDNCYD ANNLSLRIGP TIVDDDEEDQ GGKKNVDVEL 180 DLELRLGYNN H* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 8e-55 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016568141.1 | 1e-141 | PREDICTED: transcriptional regulator TAC1 | ||||
TrEMBL | A0A1U8GA01 | 1e-140 | A0A1U8GA01_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YL98 | 1e-140 | A0A2G2YL98_CAPAN; transcriptional regulator TAC1 | ||||
STRING | Solyc09g089600.1.1 | 2e-85 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2136 | 21 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-17 | C2H2 family protein |