PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g18440
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 681aa    MW: 75190 Da    PI: 6.6426
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g18440genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.96.4e-25199248151
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                 kpr++W+ +LH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQ
  CA09g18440 199 KPRVVWSIDLHKKFVTAVNQL-GLEKAVPKRILDLMNVEGLTRENVASHLQ 248
                 79*******************.***************************** PP
2Response_reg79.98.3e-27171251109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++++++++ + +  Ga 
    CA09g18440  17 VLAVDDDPICLKLLDGLLRKCQY-QVTTTSQARTALKMLRENKhrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSSNSDSKLVMKGITHGAC 111
                   799********************.***************776667*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+  eel +
    CA09g18440 112 DYLVKPVRLEELKN 125
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.7E-1471663IPR017053Response regulator B-type, plant
SuperFamilySSF521721.57E-3514142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-4214150No hitNo description
SMARTSM004483.1E-3215127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.37416131IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-2417125IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.09E-2818131No hitNo description
Gene3DG3DSA:1.10.10.602.5E-24196248IPR009057Homeodomain-like
SuperFamilySSF466896.99E-15196251IPR009057Homeodomain-like
PROSITE profilePS5129410.622196255IPR017930Myb domain
TIGRFAMsTIGR015571.7E-21199250IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MSGERENYDN FPVGMKVLAV DDDPICLKLL DGLLRKCQYQ VTTTSQARTA LKMLRENKHR  60
FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSSNSDSK LVMKGITHGA CDYLVKPVRL  120
EELKNIWQHV IRRKKVEPKN WNKSNDQDKA NQGGVEGERG SQLSGNADQN GKVKKKRKDE  180
EYESDENGND DEDSATQKKP RVVWSIDLHK KFVTAVNQLG LEKAVPKRIL DLMNVEGLTR  240
ENVASHLQAL ISRSEAQQAN MVAAALGGKD SAYIRMGSLD GLGDFRTLAG SGRFGQGQAS  300
LSSYASGGML GRLNSPAGVT LRNLASSPML QPNHGQNLSN NALMKFNPNV PSASQNANLF  360
QGIPASLEFD QLQQSKCATR MGELNPLVGS SNSAMSNVNN PILLQVNSEQ SLTGAGIGNQ  420
TSLNITTLSS EAFNTGVVTG SSNFLDHDRY NENWQNTIQP LKFQSRSFPL TEPFSNSHLP  480
QRDNDTSTGP HLQNNPVDFS TSTIVSLPFE ASRGETQCRE SSGGAVQIMN QATCQQWPDQ  540
NQHYSHNSNN IFGNLSSQVS SNGEMASLTH PMDQNNDIFC RRVETSLTGR SNGGSSTHMH  600
DSEGEKLTHH SRTNEDHLFQ PTKQQYSFLP QGYGSFDDLM SAMKQVSQPL LVCLSYVFEA  660
FEFFFPTFSH RFRQGERKLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-19197248354ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540232.10.0PREDICTED: two-component response regulator ARR12-like
SwissprotQ6H8051e-122ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A1U8DYZ00.0A0A1U8DYZ0_CAPAN; Two-component response regulator
STRINGPGSC0003DMT4000202330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-121response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]