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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g16600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 23417.4 Da PI: 10.3519 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.4e-13 | 126 | 170 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky CA09g16600 126 PWTEDEHRKFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 170 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.651 | 119 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-17 | 121 | 176 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-18 | 122 | 174 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-9 | 123 | 173 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-11 | 123 | 169 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-11 | 126 | 170 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-8 | 126 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRKCSHCGY IGHNSRTCST LKCSISGSNF IGGLKLFGVQ LDIANSSSSS SSSSSFSSHN 60 LKKSFSLDCL SLTNSHIGHS HLSSSLSPSP SINESCEKST TSINNNGYLS DGIGVGCVGE 120 RKKGAPWTED EHRKFLIGLE KLGKGDWRGI SRNFVTTRTP TQVASHAQKY FLRQSSINKK 180 KRRSSLFDMV NIHFFWILIQ LKLDRETSRK YT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 182 | KKKRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 1e-81 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016540404.1 | 1e-134 | PREDICTED: transcription factor MYB1R1 | ||||
TrEMBL | A0A1U8E989 | 1e-133 | A0A1U8E989_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YUY3 | 1e-133 | A0A2G2YUY3_CAPAN; transcription factor MYB1R1 | ||||
STRING | PGSC0003DMT400000902 | 5e-89 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3385 | 21 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 7e-50 | MYB_related family protein |