PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g14490
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 891aa    MW: 98582.4 Da    PI: 6.1357
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g14490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.38.4e-25113214199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  CA09g14490 113 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNENNQL 207
                 99*****************************8544444..48************************************************..7888889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  CA09g14490 208 LLGIRRA 214
                 ****997 PP
2Auxin_resp112.83.3e-37239322183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F++ +nPra++seFv++++k++ka++ ++vs+GmRf+m fete+ss rr++Gt++g++dldpvrWpnS+W+s+k
  CA09g14490 239 AAHAAATNSRFTISFNPRACPSEFVIPLAKYVKAVYhTRVSIGMRFRMLFETEESSIRRYMGTITGINDLDPVRWPNSHWQSVK 322
                 79*********************************9789*****************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-48101242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-43107228IPR015300DNA-binding pseudobarrel domain
CDDcd100178.14E-23112213No hitNo description
PROSITE profilePS5086313.324113215IPR003340B3 DNA binding domain
PfamPF023624.2E-23113214IPR003340B3 DNA binding domain
SMARTSM010197.2E-26113215IPR003340B3 DNA binding domain
PfamPF065075.1E-32239321IPR010525Auxin response factor
PROSITE profilePS5174520.535754838IPR000270PB1 domain
SuperFamilySSF542771.05E-5769828No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MAXCLNSELW HACAGPLVSL PHEGSRVVYF PQGHSEQVAA STNKEIDGHI PNYPGLPPQL  60
FCQLHNVTMN ADVETDEVYA QMTLQPLTPE EQKDLCLQPA ELGTLSKQPT NYFCKTLTAS  120
DTSTHGGFSV PRRAAEKVFP PLDYSQQPPA QELIAKDLHG NEWKFRHIFR GQPKRHLLTT  180
GWSVFVSAKR LVAGDSVIFI WNENNQLLLG IRRANRPQTV LPSSVLSSDS MHIGLLAAAA  240
HAAATNSRFT ISFNPRACPS EFVIPLAKYV KAVYHTRVSI GMRFRMLFET EESSIRRYMG  300
TITGINDLDP VRWPNSHWQS VKVGWDESTA GERQPRVSLW EIEPLTTFPM YPSPFSLRLK  360
RPWPSGLPSF PGLSNGDMTM NSQLPWLHGG MGDQGIQSLN FQGFGVNPFM QPRFDASMLG  420
LQPDILQAMA ALDSSKLANQ SLMQFQHIPS YSASLIQSQL LHPSNSQRTL LQGFPENQLL  480
SQAQMLQQQL QGHQSYDTQQ QQLQRQQLCH DQQLQEPHQA LSLRQDQQQT KAESQSQLSH  540
LQVLGSTGSQ QTYSDIVGNH INTSNSSSTM QNLLSSFSRN GASTFLNMPE TNSLVSPSSS  600
SKRIALESQL PSRAPYIVTQ AENLMVPNTK VSDFSNLFSP LPGREVLDYQ GVVDSQNNML  660
FGINNDSSII QQNGMSNLKG NSPDKGSLLV PYATSTFTNT GGSEFPVNSD MTSSSCVDES  720
GVLQSSENVD QANSLAGTFV KLGRVVNNVS IHVSCFWQVH KSGSFGRSLD ISKFSSYNEL  780
RSELAHMFGL EGLLENPERS GWQLVFVDRE NDVLLLGDDP WNEFVNDVWY IKILSPLEVQ  840
QMGKEGLDLP SAGKTQSIAS NGNGNGCDDF MNRNHSFSIM NGMPLGSLDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-158534351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5946840.0HM594684.1 Solanum lycopersicum auxin response factor 6 (ARF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541230.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G2YU440.0A0A2G2YU44_CAPAN; Auxin response factor
STRINGPGSC0003DMT4000741690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]