PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g12970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 39684.9 Da PI: 9.446 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.3 | 2.5e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF Ptdeel+v+yL+kkv+g++++l ++i e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g++ CA09g12970 14 LPPGFRFYPTDEELLVQYLCKKVAGHNFPL-QIIGEIDLYKFDPWVLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITS-QGRK 110 79****************************.89***************8777899**************************************9.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+apkg+kt+W+mheyrl CA09g12970 111 VGIKKALVFYVGKAPKGSKTNWIMHEYRL 139 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-67 | 10 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.341 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHN FPLQIIGEID LYKFDPWVLP 60 SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSQGRK VGIKKALVFY 120 VGKAPKGSKT NWIMHEYRLF ETSRKNGSSK LDEWVLCRIY KKNSSGPKPL MPGLRSNEYS 180 HAASSTTSSS SQFDDMLESL PEMDDRFSNL PRLSYLKTEK LNLERLDSAN FDWAILAGLK 240 PMPELGPSNQ APGVHAQAQA QVNNFIQNNN NMNFLNDVNA PPTNIRSNTK VESINLDEEV 300 ESGIRNQRFD KSGYFQQNMN GLSQLYTNNV NVGQFGIQCP NQTLNLGFRQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-106 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-106 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-106 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-106 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-106 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-106 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-106 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541783.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | Q9SQL0 | 0.0 | JA2_SOLLC; NAC domain-containing protein JA2 | ||||
TrEMBL | A0A2G2YTA7 | 0.0 | A0A2G2YTA7_CAPAN; NAC domain-containing protein 55 | ||||
STRING | Solyc12g013620.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-126 | NAC family protein |
Publications ? help Back to Top | |||
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