PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g11190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HSF | ||||||||
Protein Properties | Length: 402aa MW: 46107.3 Da PI: 4.5596 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.5 | 5.9e-35 | 14 | 106 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k ye++ede+++ lisw++++nsf+++d +f++++LpkyFkhsnf+SF+RQLn+YgF+k+++++ weF ++sF kg+k+ l++i CA09g11190 14 FLLKCYEMVEDESTDGLISWNKSENSFIIWDVPKFSSELLPKYFKHSNFSSFIRQLNIYGFHKTDTDR---------WEFLNDSFLKGRKHFLKNIV 101 9***************************************************************9999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ CA09g11190 102 RRKQS 106 *9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 9.11E-33 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.9E-36 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.7E-50 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-17 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-29 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-17 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-17 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MVRSFENGVS VAPFLLKCYE MVEDESTDGL ISWNKSENSF IIWDVPKFSS ELLPKYFKHS 60 NFSSFIRQLN IYGFHKTDTD RWEFLNDSFL KGRKHFLKNI VRRKQSSVVQ KKPSQPEEAK 120 SCTSEETKSL KLWKVVENLK VDKNVLKQEL VKLREHQQNS ESKLILLREQ LKVMEKNQQQ 180 MLSFIVMAMQ CPSFFVQFFQ PKENNLRMTE NGNNILSEVE DDCEDFPSDR AIVRYHPPTH 240 GEAAAAEPPL CAEPLCAEPE SALDTQKPME LDLSSDEIKD LFSKIDLFSG LMDEKLLSFE 300 NSVPLTLPYL PDDDDMLEQL LLSSTITENK EDEVKDSKAH SHIGMEADLS FQPIESGTFI 360 GSEEPFLSLE DTKMEMAVLE TQSENVSNMD KLTENMGHTK F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-22 | 10 | 103 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-22 | 10 | 103 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-22 | 10 | 103 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014230 | 0.0 | BT014230.1 Lycopersicon esculentum clone 133429F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016542133.1 | 0.0 | PREDICTED: heat stress transcription factor A-8 | ||||
TrEMBL | A0A1U8E4G0 | 0.0 | A0A1U8E4G0_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2YS98 | 0.0 | A0A2G2YS98_CAPAN; heat stress transcription factor A-8 | ||||
STRING | PGSC0003DMT400045089 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12235 | 22 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 1e-76 | heat shock transcription factor A8 |