PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g11190
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 402aa    MW: 46107.3 Da    PI: 4.5596
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g11190genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.9e-35141062103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k ye++ede+++ lisw++++nsf+++d  +f++++LpkyFkhsnf+SF+RQLn+YgF+k+++++         weF ++sF kg+k+ l++i 
    CA09g11190  14 FLLKCYEMVEDESTDGLISWNKSENSFIIWDVPKFSSELLPKYFKHSNFSSFIRQLNIYGFHKTDTDR---------WEFLNDSFLKGRKHFLKNIV 101
                   9***************************************************************9999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    CA09g11190 102 RRKQS 106
                   *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.11E-3310103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-5010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2914103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVRSFENGVS VAPFLLKCYE MVEDESTDGL ISWNKSENSF IIWDVPKFSS ELLPKYFKHS  60
NFSSFIRQLN IYGFHKTDTD RWEFLNDSFL KGRKHFLKNI VRRKQSSVVQ KKPSQPEEAK  120
SCTSEETKSL KLWKVVENLK VDKNVLKQEL VKLREHQQNS ESKLILLREQ LKVMEKNQQQ  180
MLSFIVMAMQ CPSFFVQFFQ PKENNLRMTE NGNNILSEVE DDCEDFPSDR AIVRYHPPTH  240
GEAAAAEPPL CAEPLCAEPE SALDTQKPME LDLSSDEIKD LFSKIDLFSG LMDEKLLSFE  300
NSVPLTLPYL PDDDDMLEQL LLSSTITENK EDEVKDSKAH SHIGMEADLS FQPIESGTFI  360
GSEEPFLSLE DTKMEMAVLE TQSENVSNMD KLTENMGHTK F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-221010325129Heat shock factor protein 1
5d5v_B1e-221010325129Heat shock factor protein 1
5d5v_D1e-221010325129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142300.0BT014230.1 Lycopersicon esculentum clone 133429F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542133.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLA0A1U8E4G00.0A0A1U8E4G0_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YS980.0A0A2G2YS98_CAPAN; heat stress transcription factor A-8
STRINGPGSC0003DMT4000450890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-76heat shock transcription factor A8