PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g08220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 294aa    MW: 34437.9 Da    PI: 8.0477
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g08220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.55e-2547129186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ qe+++ + +r e+++++ ++k++k lWe ++ km+e+g++rsp+qCk+kw+nl +ryk +++ e +     ++++p++++l+
  CA09g08220  47 QWSIQETRDFLMIRAELDQTFMETKRNKLLWEVIATKMKEKGYNRSPEQCKCKWKNLVTRYKGCETLEPEA--L-RQQFPFYNELQ 129
                 7********************************************************************95..3.4589*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.44E-2446111No hitNo description
PfamPF138371.7E-2047131No hitNo description
PROSITE profilePS500907.44548104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDPHLHHHHH QHHQQQPQHQ FSHHQSVNID TTGGGVNIGG GADRFPQWSI QETRDFLMIR  60
AELDQTFMET KRNKLLWEVI ATKMKEKGYN RSPEQCKCKW KNLVTRYKGC ETLEPEALRQ  120
QFPFYNELQA IFAARMQRML WIEAEGGGGG GASGSKKKAI SSDEEEENED SEGEKVGKKK  180
RKIKGNIFGC SSGGSGNNLV SSFKEIFDDF MKQQMAMEMQ WLKAFEAKEE ERRIKEMEWR  240
QTMEALENER LMMERRWRER EDQRRVREEA RAEKKDALIT ALLNKLRRED HNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A3e-1344108367DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542034.10.0PREDICTED: trihelix transcription factor GT-3b
SwissprotO804503e-68TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1U8EDU30.0A0A1U8EDU3_CAPAN; Trihelix transcription factor GT-3b
TrEMBLA0A2G2YS800.0A0A2G2YS80_CAPAN; trihelix transcription factor GT-3b
TrEMBLA0A2G3BKD70.0A0A2G3BKD7_CAPCH; Trihelix transcription factor GT-3b
STRINGXP_009799172.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-52Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]