PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g02640
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 689aa    MW: 75609.8 Da    PI: 7.3111
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g02640genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.1e-23121222199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l
  CA09g02640 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNYKKLVAGDSIVFL--RAENGDL 215
                 89****************************996555555..89***********************************************..4488999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  CA09g02640 216 CVGIRRA 222
                 ****997 PP
2Auxin_resp114.41e-37286369183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  CA09g02640 286 AANLAASGQPFEVIYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVSDPIRWPDSPWRLLQ 369
                 7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-37112225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-29114224IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-21120221No hitNo description
PfamPF023622.1E-21121222IPR003340B3 DNA binding domain
SMARTSM010194.3E-21121223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985121223IPR003340B3 DNA binding domain
PfamPF065079.4E-33286369IPR010525Auxin response factor
PROSITE profilePS5174514.068605685IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MITFMDPKDK VKEIEKCLDS QLWHACAGSM VQMPSISSKV FYFPQGHSEH ACGNVDFRSS  60
IRIPSYIPCK VSAIKYMADP ETDEVFAKIR LIPVSRNEVE FDDDGVVGLN GSDNQDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNYKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ETSSGWNPAG  240
GNCMVPYGGF SSFLRDDENK LLRNGNGSNS GNMNRGKVKA ESVIEAANLA ASGQPFEVIY  300
YPRASTPEFC VKASLVKAAL QIRWCSGMRF KMPFETEDSS RISWFMGTIS SVQVSDPIRW  360
PDSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPTIHL SPFSPPRKKL RLPQHPDFPL  420
DGHLPMPAFS GNHLLGPNSP FGCLPDNTPA GMQGARHAQC GLSLSDLHFN KLHSSLFPVG  480
FPPLDQAAAA PRRPLNSPTI SKPCNSENIS CLLTMGNSAH STKKSDIKKA PQLVLFGQPI  540
LTEQQISLSC SGDTVSTVRT GNSSSDGNAD KTGNVSDGSG SALNQRGLTE RSPCDIFQSE  600
PNTEIGHCKV FMESEDVGRT LDLSLLGSYE ELCRKLANMF GIDSSEMLNH VLYQDTTGAV  660
KQLGDEPFRY ILKNFPILCI AFVVRNDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-81839041388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542732.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2YQ850.0A0A2G2YQ85_CAPAN; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]