PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g02260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family BBR-BPC
Protein Properties Length: 290aa    MW: 32144.1 Da    PI: 8.6983
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g02260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind308.13.1e-94128929301
   GAGA_bind  29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse....... 116
                 m+++aerda+irern+al e+k a+aerdma lqrd+alaern+ + erd++++al l++ s++      +++g ++ sg+k+i + qq+++       
  CA09g02260   1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERDDAIAALRLQDSSTNdnnmVPDSPGNGTESGAKHIYNQQQMHRtiaeaah 99 
                 899****************************************************99988877766444455677888888888866664433333333 PP

   GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader..................skaekksidlv 197
                   ++d++++  +   +++ ++ +++            +r+k+ +++k+ k  + s++  ++ +++   ++                  + +++k  +l+
  CA09g02260 100 GSMKDPTAGYLKDTDTSEAKVPKKV------------RRPKESRHNKQAKIPRVSKNGAESLNMQVIATTsddwanlqemdsdkdgdtQLTSWK-DNLG 185
                 3344444443333333333333333............333333333333333333333333333333322234444555555556663555665.59** PP

   GAGA_bind 198 lngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296
                 ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++Laa+Gydls p+DLkdhWAkHGtn+
  CA09g02260 186 LNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDLSIPLDLKDHWAKHGTNR 284
                 *************************************************************************************************** PP

   GAGA_bind 297 fvtir 301
                 + t++
  CA09g02260 285 YSTLK 289
                 *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.3E-831289IPR010409GAGA-binding transcriptional activator
SMARTSM012262.9E-961289IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALA ERNALIQERD DAIAALRLQD  60
SSTNDNNMVP DSPGNGTESG AKHIYNQQQM HRTIAEAAHG SMKDPTAGYL KDTDTSEAKV  120
PKKVRRPKES RHNKQAKIPR VSKNGAESLN MQVIATTSDD WANLQEMDSD KDGDTQLTSW  180
KDNLGLNQIN FDESAMPVPV CSCTGTPQPC YKWGHGGWQS ACCTTTISMY PLPQISNKRY  240
SRVGGRKMSG GAFSKLLNRL AAQGYDLSIP LDLKDHWAKH GTNRYSTLK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823130.0FJ982313.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560524.10.0PREDICTED: barley B recombinant-like protein D
TrEMBLA0A1U8FXT20.0A0A1U8FXT2_CAPAN; barley B recombinant-like protein D
STRINGPGSC0003DMT4000091370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80622230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.25e-83basic pentacysteine 6