PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g01450
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 450aa    MW: 50282.2 Da    PI: 4.5741
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g01450genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34521442103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+ l+++i ws+ng+sfvv+d+ ef++ vLp+ Fkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F +gkk+ll++i+
    CA09g01450  52 FLSKTFDLVDDPLLDSVIGWSNNGESFVVWDPVEFSRLVLPRNFKHSNFSSFVRQLNTYGFRKIDADK---------WEFANEGFLRGKKHLLKNIQ 139
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
    CA09g01450 140 RRKSH 144
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.81E-3447141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-5548141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-3648141IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-175275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3052141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-1790102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-17103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEFEFAAFPL PSADPLISFE SFSNPLSQST KEEVLSVPQP MECLHGTQIP PFLSKTFDLV  60
DDPLLDSVIG WSNNGESFVV WDPVEFSRLV LPRNFKHSNF SSFVRQLNTY GFRKIDADKW  120
EFANEGFLRG KKHLLKNIQR RKSHQAGSSL GSSAEAGKAT VDEIEKLKKE RSLMMQEVVE  180
LQQQQRGTVQ QMESVNEKLV AAEQKQKQMV SFLAKVFQNP TFFGRIRQMK EQGEITSSRT  240
MRKFIKHQPH DSSREESSME GQIVKYRPDF QDLATSFESP PFNPVVDQQL PETVASEGLT  300
TAHGFLKNPD RVVEGASGFN PDGSHFKGKN VVSPQLEVMP EYFSFPEELE EERNVSGFSP  360
GIESMMKEEE VWSMGFEASA GMSSTGTELW GGLGNYVPDF GVSSGLSDLW DLDPLLAAGG  420
SGVDKWPDDE SPFGQSENQV NQPKSDDSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-234714115120Heat shock factor protein 1
5d5u_B2e-234714124129Heat shock factor protein 1
5d5v_B2e-234714124129Heat shock factor protein 1
5d5v_D2e-234714124129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1203600.0GU120360.1 Solanum lycopersicum heat stress transcription factor A3 (HSFA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542894.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_016542895.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_016542896.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_016542897.10.0PREDICTED: heat stress transcription factor A-3
RefseqXP_016542898.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A1U8E8W00.0A0A1U8E8W0_CAPAN; Uncharacterized protein
TrEMBLA0A1U8EG950.0A0A1U8EG95_CAPAN; heat stress transcription factor A-3
STRINGXP_009621033.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-87heat shock transcription factor A3