PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g17400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 21565.2 Da PI: 10.2372 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.3 | 4.6e-19 | 16 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyey 49 +n+sn +vtfskR g++KKA+EL++LC+ae+ +++fs + +k+y + CA08g17400 16 MKNQSNMKVTFSKRPVGLFKKANELCTLCGAEIVIVVFSlgKANKVYSF 64 58***********************************963367777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.3E-24 | 6 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.974 | 6 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-21 | 7 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-13 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-19 | 16 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-13 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-13 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MARRSKGRKK VEIVKMKNQS NMKVTFSKRP VGLFKKANEL CTLCGAEIVI VVFSLGKANK 60 VYSFGHPSVE LLVDRFLGRD LPPPNDDGHN HLIMAHRNIG QRGLNKEVMD MQESLQKEKA 120 VGQSLLEFGR RAYDRCCESP IIEGLSLSQL QQLKKALEVQ KRKVEFEAEL RQMVSDALLP 180 LLTFGSALSP SN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582030.1 | 1e-138 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8HF82 | 1e-136 | A0A1U8HF82_CAPAN; agamous-like MADS-box protein AGL62 | ||||
STRING | Solyc01g106730.1.1 | 1e-71 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-36 | AGAMOUS-like 62 |