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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g14240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 114aa MW: 12892.8 Da PI: 8.5059 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 57.6 | 2.8e-18 | 3 | 52 | 4 | 54 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHR 54 ++Y Clk hA + G vDGC+Ef++s g++gt++a Ca CgC R FH CA08g14240 3 IKYGVCLKSHATKFGHFEVDGCREFVKS-GDDGTKEAYICANCGCIRGFHQ 52 78*************************9.999******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-9 | 2 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-18 | 3 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.05 | 5 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MVIKYGVCLK SHATKFGHFE VDGCREFVKS GDDGTKEAYI CANCGCIRGF HQINNPLLHH 60 YQAIKFRFLH NGVIPQGENV SISRPFMREI FFTRTPQVSF PNSLPDLIRD PVH* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 6e-39 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022973076.1 | 1e-15 | mini zinc finger protein 3-like | ||||
TrEMBL | A0A2G2Y2G1 | 3e-79 | A0A2G2Y2G1_CAPAN; Mini zinc finger protein 2 | ||||
STRING | Solyc05g018740.1.1 | 4e-32 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13748 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 2e-14 | mini zinc finger 2 |