PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g12220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 405aa    MW: 44540.9 Da    PI: 8.9814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g12220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-057193123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  CA08g12220 71 FICEVCNKGFQREQNLQLHRRGH 93
                89*******************88 PP
2zf-C2H215.26e-05148170123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H++t+
  CA08g12220 148 WKCDKCSKKYAVQSDWKAHLKTC 170
                 58*******************98 PP
3zf-C2H210.60.0018178196523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg+ Fsr++++++H   +
  CA08g12220 178 DCGTIFSRRDSFVTHRAFC 196
                 8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-77093No hitNo description
PROSITE profilePS5015710.997193IPR007087Zinc finger, C2H2
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PfamPF121711.8E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355110113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-7143168No hitNo description
SMARTSM0035585148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSNLSYGNSS TEEADETPNV LSSTTSDGSS VHQEQPLPSP NKRRRKLPGN PDPSAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTSNHEIKK RVYICPESSC  120
VHHDPARALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHLKTC GTKEYKCDCG  180
TIFSRRDSFV THRAFCDALA EENNKVNQVL ASTTQPAATS TGSTQLGPEL ISNTSMLNLL  240
QISNPNIKVP PTSLSNMAGS MFSSSSGYGQ LGTNSSNMSS ATALLQQAAQ MGATVSSNMN  300
SSINVARKSY RSPFNGMQIP IISDHDQIQP QIGNTSVHGF AGSMLQNSSS NNDSLTLDFL  360
GIGGMRQRNL HEIIQQQQQQ EMSFEQQKEV GQQSIQGMNS MWDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-33144209368Zinc finger protein JACKDAW
5b3h_F8e-33144209368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937771e-143AC193777.1 Solanum lycopersicum chromosome 1 clone C01HBa0051C14, complete sequence.
GenBankHG9755131e-143HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538617.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-111IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2G2Y0C30.0A0A2G2Y0C3_CAPAN; Zinc finger protein MAGPIE
TrEMBLA0A2G3AT400.0A0A2G3AT40_CAPCH; Zinc finger protein MAGPIE
STRINGSolyc01g099340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-99indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]