PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g11740
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 341aa    MW: 38608.9 Da    PI: 4.7656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g11740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.7e-15139190155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r +h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  CA08g11740 139 QRITHIAVERNRRKQMNEYLSVLRTLMPQS---YVQRGDQASIVSAAINYVKELE 190
                 799***************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.80E-14137194No hitNo description
Gene3DG3DSA:4.10.280.109.1E-15138194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.656138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-17138203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-12139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALETITQQQ QQYLCALLGS TNWSVGSDSG SGSGSGSALD YYNNEGFDEF LTNNQNVSAP  60
QEYDDYSNWN LPPPLLVDSQ NEFHEWDQTF SVLDHNFTIP DQQEQLPALG TPVENCSSTT  120
RPRRRRTRTK KNEEEIENQR ITHIAVERNR RKQMNEYLSV LRTLMPQSYV QRGDQASIVS  180
AAINYVKELE QQLQFLSGQK HLTGQNEEAN GETSPFSEFF SIPQYSTTMT VATTSENGPC  240
MNENYKNQQL PATADIEVTM VENHANLKIR SKRRPRLLPR IISGLESLRL SVLHLNVSKV  300
DQFVLCSLSL KVEEDCQMSS VEEIAAVVNQ ILRRIHEEAN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120127RPRRRRTR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331331e-137AC233133.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-57c7 map 1, complete sequence.
GenBankHG9755131e-137HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361869.11e-179PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T48e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2G2YZK00.0A0A2G2YZK0_CAPAN; Transcription factor bHLH96
STRINGPGSC0003DMT4000735741e-178(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]