PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g07630
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 320aa    MW: 35855 Da    PI: 9.6805
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g07630genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-1356100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       CA08g07630  56 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 100
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1750106IPR009057Homeodomain-like
PROSITE profilePS5129415.40851105IPR017930Myb domain
TIGRFAMsTIGR015571.4E-1854103IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-654106IPR009057Homeodomain-like
SMARTSM007175.3E-1155103IPR001005SANT/Myb domain
PfamPF002492.6E-1156100IPR001005SANT/Myb domain
CDDcd001671.89E-858101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVSVYPTLPG QDFQYMGDPM KTGLRGLHPV QSGTGLVMPD DPNKKTRKPY TITKSRESWT  60
EQEHDKFLEA LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKSGTS EHLPPPRPKR  120
KAAHPYPQKA PKKVMSQVGS IQFQPPGALP EPGFGIGPDP LSVPGNAINF SPWTYDNVPA  180
ISTTQMRKDD AQLTSGGVMQ NCSSSSNESM PRNRKTLEAN DQKESQKQMK VMPDFAEVYS  240
FIGSVFDPST RDHLERLKKM DPIDIQTALM LMKNLSFNLS SPECEDHRRL LSSYGLGIEK  300
DKMDLPIKTD FRGNAIQAV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538124.10.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W33e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2G2YXV70.0A0A2G2YXV7_CAPAN; Protein REVEILLE 3
TrEMBLA0A2G3BT670.0A0A2G3BT67_CAPCH; Protein REVEILLE 3
STRINGPGSC0003DMT4000005460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.25e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]