PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g01030
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 570aa    MW: 61959.4 Da    PI: 8.3192
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g01030genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-053557123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C+k F r  nL+ H r H
  CA08g01030 35 FVCEVCNKGFQREQNLQLHRRGH 57
                89*******************88 PP
2zf-C2H215.16.6e-05111133123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC++C+k +  +s+ k H +t+
  CA08g01030 111 YKCEKCSKKYAVQSDWKAHTKTC 133
                 9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-63457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-73457No hitNo description
PfamPF121713.7E-53557IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0943557IPR007087Zinc finger, C2H2
SMARTSM003550.00413557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SMARTSM0035514076106IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-599132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-7106131No hitNo description
SMARTSM0035571111131IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MFIYLFIFVI FFFFTDPDAE IIALSPKTLM ATNRFVCEVC NKGFQREQNL QLHRRGHNLP  60
WKLKQKSTKE CKRKVYLCPE PSCVHHEPSR ALGDLTGIKK HYSRKHGEKK YKCEKCSKKY  120
AVQSDWKAHT KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARNP PSLSTIGSHL  180
YGNNMSLGGG GSLAKFNSQM PDHQDMLHFG SSNNSNKTIT SGGSHHLHHH NHQFDHNNNN  240
NNLMGPSSAF RPSTAFFQLP ADQTSHQDYA GGDKHHTSSS SIQGLMQLPD LHNNANVVAP  300
SSSSMFNLNF FQNNNSNNNN NNNNNNDDVV VDNDNNNISG GLGGLLLPSP HQFSNNNSGE  360
GSNNSSNIFS PSTLLGHNMS SSFPSLYVSS SIPAPPMSAT ALLQKAAQMG STTSCNNSST  420
SASLLKVFGS APGAGASVGL GGSSSSGTKS DLHPPPPVNF AGVYGHENPM NTGNHLHDLV  480
VNAYGAQEQH QEYGGVIGGG YNNNNKMNGY NEQPPQKKQM INNNNFSMEI GMSEEANRLT  540
RDFLGVGEIV RSMNGGGSNN NPFGGGNFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34107168364Zinc finger protein JACKDAW
5b3h_F4e-34107168364Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-167HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537423.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
TrEMBLA0A1U8DQX00.0A0A1U8DQX0_CAPAN; protein indeterminate-domain 6, chloroplastic-like
STRINGXP_009786293.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-95indeterminate(ID)-domain 5