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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g18840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26357.9 Da PI: 8.665 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.3e-10 | 79 | 126 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ll + +K +K++iL Av+ + +L CA07g18840 79 SKACREKLRRDRLNDKFMELGALLEAG---RPPKTDKSAILVDAVRMVTQL 126 5678**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.589 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-12 | 78 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.92E-8 | 78 | 131 | No hit | No description |
Pfam | PF00010 | 2.4E-8 | 79 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-13 | 79 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-8 | 81 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MVSPENTTNW LYDYGFEDSS VPDSNFSASA SGFNWPLQNL NGSTNVRSEI DGSIGESDYP 60 KESGSKKRAR VESCAPTSSK ACREKLRRDR LNDKFMELGA LLEAGRPPKT DKSAILVDAV 120 RMVTQLRDEA QKLKDSNLNL QEKIKELKAS ITSLAKTELR DEKQRLKAEK EKLEQQLKTT 180 PAQPSFLPPG IPAAFAAHGQ LPGSKLVPIM SYPGVAMWQF MPPAAVDTSQ DHVLRPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU880279 | 0.0 | EU880279.1 Nicotiana tabacum basic helix-loop-helix protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556851.1 | 1e-170 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-104 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2G2Z5E0 | 1e-174 | A0A2G2Z5E0_CAPAN; Transcription factor ILR3 | ||||
TrEMBL | A0A2G3C2X0 | 1e-174 | A0A2G3C2X0_CAPCH; Transcription factor ILR3 | ||||
STRING | PGSC0003DMT400049592 | 1e-160 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-92 | bHLH family protein |