PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g15920
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 433aa    MW: 49296.7 Da    PI: 5.1369
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g15920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34201102101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ ++ ++sws+ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF++++F +g+++ll++i 
    CA07g15920  20 FLSKTYELVDDAYTNPVVSWSHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEEFIRGQRHLLKNIY 107
                   9***************************************************************9998.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    CA07g15920 108 RRK 110
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-3813104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6016109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.28E-3416109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVSIVMENSN GGSSSAPAPF LSKTYELVDD AYTNPVVSWS HNGRSFVVWN PPEFARDLLP  60
KYFKHNNFSS FIRQLNTYGF RKVDPEQWEF ANEEFIRGQR HLLKNIYRRK PIHSHSASGQ  120
SVPPLTDTER QEYEDEIERL KRENRLLQSS AENQEKFNQE YEIGIKSVEQ RLQNVAHRQG  180
KLISLLTQLL QRPEFSSDLI QCTNSNSKKR RLLVSNYLTE EENATTNSVV APKLDLEMVK  240
KLDSSINFWE HFLYGIRMNP TEDQICDFEH PQPLPPQIVI REMDTSSDDS GKRNSPITHS  300
PSPSRDIQSS PEFGGGPLSP VISSIYVNLE CQLKPSDQTN LVIDATESQV EGNATKASES  360
VPNSGNDVFW EQFLTERPGC TEPQQVENKD INGLTCDSRL VEDHRYWWNR GFNVENLAER  420
MGHLSSPATT GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-241110912120Heat shock factor protein 1
5d5u_B9e-241210922129Heat shock factor protein 1
5d5v_B9e-241210922129Heat shock factor protein 1
5d5v_D9e-241210922129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580939.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A2G2Z4R40.0A0A2G2Z4R4_CAPAN; Heat stress transcription factor A-5
STRINGPGSC0003DMT4000446830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-81HSF family protein