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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g14840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27455.2 Da PI: 8.0657 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 4.8e-13 | 56 | 102 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN + +Lr l+P K++Ka+ L k++ +Ik+L CA07g14840 56 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVIGHIKEL 102 58*************************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.281 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 56 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-14 | 56 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 57 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.17E-4 | 141 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDFFNSFNGV YEDYGRFGGS SSSSLILDNE SGELVKALVK PGQKGVNPEK ALIALKNHSE 60 AERRRRERIN GHLGTLRNLI PGTNKMDKAA LLAKVIGHIK ELRMNAAEVT KGVLVPTDID 120 EVKVEQQAEG SDGATYSVKA SLCCDYKHEL ISDLRQALDT LPLKTLRAEI ATLGSRMISV 180 FVITEGNEGN IEDIERCQLL VTSVRQALRS VLDKFYASEE FSSRSTLSSK RRRISLLNSS 240 SSSSVGDFW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 66 | ERRRRE |
2 | 229 | 233 | KRRRI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556660.1 | 0.0 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A1U8FD84 | 0.0 | A0A1U8FD84_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2Z469 | 0.0 | A0A2G2Z469_CAPAN; transcription factor bHLH30-like | ||||
STRING | PGSC0003DMT400052622 | 1e-147 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11989 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-31 | bHLH family protein |