PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CA07g14420

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-other

Protein Properties

Length: 1718aa MW: 194109 Da PI: 5.4001

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA07g14420	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.3	4e-11	2	36	23	57
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRakekk 57 yps++ r+eL+ klgL++rq ++WF+ rR k++k CA07g14420 2 TYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 36 6********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.102	1	37	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-8	2	38	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-8	2	36	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.4E-9	2	36	IPR009057	Homeodomain-like
CDD	cd00086	2.77E-7	3	36	No hit	No description
SMART	SM00571	1.2E-23	515	574	IPR018501	DDT domain
PROSITE profile	PS50827	16.679	515	574	IPR018501	DDT domain
Pfam	PF02791	1.0E-18	516	571	IPR018501	DDT domain
Pfam	PF05066	2.2E-15	697	764	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.8E-9	906	946	IPR028942	WHIM1 domain
Pfam	PF15613	3.9E-12	1089	1161	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1718 aa Download sequence Send to blast
DTYPSEALRA ELSVKLGLSD RQLQMWFCHR RLKDRKATPV KRQKKEEASP AAVVSSGGQV 60 DEMAAVSGEI GKEHASGSGS RVIPLGGGLM DLQVQQQHHQ RVVHRPGTAV PRFRAEMPAL 120 KRYYEPPQAI SELRAIAFVE AHLGEPLRED GPILGMEFDP LPPGAFGAPI VADTQHKPAG 180 RPFEAQIYER QDVNSIKGTT RTLREYQFLP EQPSNRSNSY EQSIPSHYYS STEVQSTRTM 240 LSTGRHGSEQ VASGYSIPGQ IPTLNLLPPG RQGHISPASA EAEAAPQRSL VNIEVEANYS 300 GQPMMKLESP FMSSDKRIIH DEERLERKRK SEEARIAREV DAHEKRIRKE LEKQDMLRRK 360 REEQMRKDME RQDRERRKEE ERLVREKQRE EERYQREQRR EMERREKFLQ KEYMKAERMR 420 LKEEMRREKE VARLKAANVR ATARRIAKES TELIDDERLE LMELAASKKG LPSTLSLDTE 480 TLQNLEAFRD MLNEFPPKSV CLRRPFGVEP WICSEEDVGN LLMVWRFLIT FTDVLHLWPF 540 TLDEFVQAFH DYEPRLLAEM HIALLKLIIK DIEDVARTPA GAAAANPNSG ANPGGGHPDI 600 VEGAYAWGFD IRSWQSHLNS LTWPEILRQF ALSAGFGPQL KKSSVEPAYP RDENECKNGA 660 DIISNLRSGV AAQKAVVKMQ ERGFSNLRKS RHRLTPGTVK FAAFHVLSLE GSQGLNILEV 720 AEKIQKSGLR DLTTSKTPEA SISAALSRDT KLFERTAPST YCVRDPYRKD PVDADAILSA 780 AREKIRLFKN EYVNGEEAED VEKEVDRDDE SESDAADDPE VDDLVSELKF AETPESHKTG 840 RTDGKNSSFD LTRTPEDLSM QNSTGIMHSQ SFRESKPVGT SGDQSTAGDV DASNLNQENA 900 VIDESNAGQK WVQGLMEGEY SDLTVEERLH ALVALIGVAN EGNSVRLVLE ERLEAASALK 960 KQIWAEAQLD KRRFKEEFLL KVQYPSIRNN GEQFGSVTSV EARQSPLLAV GGHNGVADIL 1020 SLQQEAMHKL PDEPINPSNA AVEKTCPMQE IYGGQDNSQL QHFACVAEKS RSQLKAYIGY 1080 RAEETFVYRS LPLGQDRRRN RYWQFVTSPS RYDPGSGRIF VELCDGRWRL IDSEKDFNAL 1140 MASLDIRGLR ESHLHSMLQN IEATFKETAR KHKYTDEKLG NSVKEDTSER VPSNDCCSNT 1200 DSLKSTTCIS NRETREPSTS FLIGFGRNKM ENTNALRRYA DLEKWMWEEC VDSQFLCARK 1260 YGRMRSENLI GICNNCHDTY FWEDKHCPSC HRTFSPVKSS YFIEHVAQCK EKLEDLFLPL 1320 CILDSLPALR VRLLRAQLAS VEACIPPEAL QPVWSEVYRR SWGSKLHIAS TAGDLLQILT 1380 LLEGAIKGEY LISEYETTSE LLGAVSNSNL DGMAVLPWVP HTTSAVALRL MELDSSLCYT 1440 QQQKADSLKD DKPTDFIIKT NYDELKRVAG IVSVEGREYE KLEPDFLVKV GGRHANSAQG 1500 RNRVRGGTHC RIRGGKSQRK VDASRSESAQ RSSMKNNDRL DHLLAWKGRD GGKGRRKKGR 1560 RSVRNRQKPM KNVEEVTVEE VPLSNQQDWN EVEDGETPQF EAPDNDSDSG TSGNEDYKGQ 1620 VTIDDYEDLM VDDYGSFTGR TDHASASVSY SIGRPYTEIA EGGDGVGDYE DDRDEEDDEN 1680 VQGYFDGEFE EEGNRFGDEE YVETPKKDSE SSSEYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1718 aa Download sequence Send to blast

DTYPSEALRA ELSVKLGLSD RQLQMWFCHR RLKDRKATPV KRQKKEEASP AAVVSSGGQV  60
DEMAAVSGEI GKEHASGSGS RVIPLGGGLM DLQVQQQHHQ RVVHRPGTAV PRFRAEMPAL  120
KRYYEPPQAI SELRAIAFVE AHLGEPLRED GPILGMEFDP LPPGAFGAPI VADTQHKPAG  180
RPFEAQIYER QDVNSIKGTT RTLREYQFLP EQPSNRSNSY EQSIPSHYYS STEVQSTRTM  240
LSTGRHGSEQ VASGYSIPGQ IPTLNLLPPG RQGHISPASA EAEAAPQRSL VNIEVEANYS  300
GQPMMKLESP FMSSDKRIIH DEERLERKRK SEEARIAREV DAHEKRIRKE LEKQDMLRRK  360
REEQMRKDME RQDRERRKEE ERLVREKQRE EERYQREQRR EMERREKFLQ KEYMKAERMR  420
LKEEMRREKE VARLKAANVR ATARRIAKES TELIDDERLE LMELAASKKG LPSTLSLDTE  480
TLQNLEAFRD MLNEFPPKSV CLRRPFGVEP WICSEEDVGN LLMVWRFLIT FTDVLHLWPF  540
TLDEFVQAFH DYEPRLLAEM HIALLKLIIK DIEDVARTPA GAAAANPNSG ANPGGGHPDI  600
VEGAYAWGFD IRSWQSHLNS LTWPEILRQF ALSAGFGPQL KKSSVEPAYP RDENECKNGA  660
DIISNLRSGV AAQKAVVKMQ ERGFSNLRKS RHRLTPGTVK FAAFHVLSLE GSQGLNILEV  720
AEKIQKSGLR DLTTSKTPEA SISAALSRDT KLFERTAPST YCVRDPYRKD PVDADAILSA  780
AREKIRLFKN EYVNGEEAED VEKEVDRDDE SESDAADDPE VDDLVSELKF AETPESHKTG  840
RTDGKNSSFD LTRTPEDLSM QNSTGIMHSQ SFRESKPVGT SGDQSTAGDV DASNLNQENA  900
VIDESNAGQK WVQGLMEGEY SDLTVEERLH ALVALIGVAN EGNSVRLVLE ERLEAASALK  960
KQIWAEAQLD KRRFKEEFLL KVQYPSIRNN GEQFGSVTSV EARQSPLLAV GGHNGVADIL  1020
SLQQEAMHKL PDEPINPSNA AVEKTCPMQE IYGGQDNSQL QHFACVAEKS RSQLKAYIGY  1080
RAEETFVYRS LPLGQDRRRN RYWQFVTSPS RYDPGSGRIF VELCDGRWRL IDSEKDFNAL  1140
MASLDIRGLR ESHLHSMLQN IEATFKETAR KHKYTDEKLG NSVKEDTSER VPSNDCCSNT  1200
DSLKSTTCIS NRETREPSTS FLIGFGRNKM ENTNALRRYA DLEKWMWEEC VDSQFLCARK  1260
YGRMRSENLI GICNNCHDTY FWEDKHCPSC HRTFSPVKSS YFIEHVAQCK EKLEDLFLPL  1320
CILDSLPALR VRLLRAQLAS VEACIPPEAL QPVWSEVYRR SWGSKLHIAS TAGDLLQILT  1380
LLEGAIKGEY LISEYETTSE LLGAVSNSNL DGMAVLPWVP HTTSAVALRL MELDSSLCYT  1440
QQQKADSLKD DKPTDFIIKT NYDELKRVAG IVSVEGREYE KLEPDFLVKV GGRHANSAQG  1500
RNRVRGGTHC RIRGGKSQRK VDASRSESAQ RSSMKNNDRL DHLLAWKGRD GGKGRRKKGR  1560
RSVRNRQKPM KNVEEVTVEE VPLSNQQDWN EVEDGETPQF EAPDNDSDSG TSGNEDYKGQ  1620
VTIDDYEDLM VDDYGSFTGR TDHASASVSY SIGRPYTEIA EGGDGVGDYE DDRDEEDDEN  1680
VQGYFDGEFE EEGNRFGDEE YVETPKKDSE SSSEYSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016580824.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1U8HJV5	0.0	A0A1U8HJV5_CAPAN; homeobox-DDT domain protein RLT2-like
STRING	Solyc07g053610.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator